XLOC_009978 (invs)


Basic Information

Item Value
gene id XLOC_009978
gene name invs
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27442549 ~ 27502702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019864
GCGGATTCAAGATATGTTGGAGTATCAGTGGCCACAGAGGGGCTGAAGCCCCCCCAAAAGTACAAAAACAGCGAAAACACTGCAATGCGTAAAAACCTTTGTTGTGTTTAATGCCAGAGATGGAAGTACAAGGTTAATTGTGTTTCACCTTGAATGTGAACACTAGATCAGAGCTGCAAGGGGGACCTGCGGCCACGCCAAGCCCCAGCAAGGCTTCACTTAGCTGTGTAACATCTGCTGACGCCTCCCTGCGTCCAGGACATCACTATGgcAATGCTGCTCCCCCAGAATCCATCTCAGGTACATGCGGCCGCTGTGAACGGAGACAAGAACACCTTGCAGAAACTGATCACAGAATCTGCTCTGCGGGACAGTGAGGATCAGTTCGGCCGGACTCCTCTGATGTATTGTGTTCTGGCTGACCGTTTGGACTGTGCAGAGGTGCTGCTTAAGGCCGGCGCCGCCATCAACAAAACTGACCACAGTCAGAGAACTGCCCTGCATCTCGCTGCACAGAAGgGCAACGTGCGTTTCATGAAACTCCTACTGTCACGTCATGCTGATTGGCGATTGAAAGATCTGGAGGAAATGACTCCATTACACCTGGCATCCCGTCATTCCAGCTCTAAACCTTTGTCTCTGCTCCTCAAACACATGGCGCCCGGTGAAGTGGACACACAGGACAGGAATAAGCAGACGGCGTTGCACTGGAGCGCTTTCTACAATCACCCCGAGCATGTAAAGCTGCTGATCAAGCATGATTCAAACATCGGCATCCCAGACAGCGAAGGCAAGATCCCTCTACACTGGGCAGCACACAACAAACACCCCAATGCCACCCGGACAGTGCGCTGTATCCTGGAAGCTGCTCCAACAGAGTCTCTGTTGAACTGGCAGGACTATGAGGGACGGACCCCTCTGCATTTTGCAGTGGCTGATGGGAATGAGGCAGTGGTTGAGGTCCTGACGTCATATGAAGGTTGCAGCGTTACAGCTTATGATAACCTGTTCAGGACACCACTGCACTGGGCGGCACTGCTGGgtcATGCAAAGATTGTCCACCTGCTGTTGGAGAGGAATAAGTCTGGGATGATCCCATCAGACAGTCAGGGAGCAACACCACTGCATTATGGAGCTCAGAGCAACTATGCAGACACCGTTGCAGTGTTTCTGAAACACCACTCTGTAAGAGATGAGCCTGACCTAGAGGGACGAACCGCCTTCATGTGGGCCGCTGGGAAAGGCAGTAATGATGTCATCAAAATCATGCTGGATTTGAAAAAAGACATAGACATCAACATGACAGACAAATATGGAGGGACAGcTCTTCATGCGGCTGCACTGTCAGGTCATGTGTCCACTGTGCGCTTGCTGCTGGAGCAGGGAGGAATGGTGGACCCACTGGACGTCATGAAACACACCCCTCTATTTCGTGCGTGCGAGATGGGCCATCGAGATGTCATACTAACACTCATTAAAGgaggtGCTCGTGTTGATCTAGTAGACATAGATGGGCACTCTGCACTGCACTGGGCAGCTCTGGGTGGTAATGCAGAGGTGTGTGAGGTGCTAATGGAGAATGGGATCAGTCCTAACCTGCAGGACCAAGCTGGACGGACACCCTTACAGTGTGCAGCGTATGCTGGCTACATAAACTGCATGGCCTTGCTCATTCAGCACGATGCAGACCCTAATATTCAGGACAAGGAGGGGAGAACCGCACTCCACTGGTCCTGTAATAATGGTTATCTGGATGCTGTGAAGCTGTTGCTGGGGTGTGGGGCATTTCCCAATCACATGGAGCACACTGAAGAGAGgtACACTCCTCTGGACTACGCTCTTCTGGGTGAGCATCAGGAACTGACTCAGTTCCTCCTGGAGCATGGAGCTCTGTCCATCGCCGCCATCCAGGACATCGCTGCCTCCTCTATCCAGGCACTTTACAAAGGCTACAAGGTCCGGCGGGCCTTCAGGGAACGCAAGAAGCTCCTCATGCGACACGAACAACTGCGCAAGGATGCTGCCAAGAAGAGGGAGGAAGAACGCAGGCGTGAGGCAGAGCAGCAGCTCTCGTTGGCTGAGGCAGGTCAGAAGCAGCGTGTCTTATTGGCTGCAGTCGGGGTGGAAAAGCTATCACTGGATGAAGCCGAGCAGAGGTTTAAAGATTCAGTGGCGGCAAAAGGACACAAACACAAAAAGTCCTCCAGTGCTCATAATAGTCAGAGCAGGAGAGAGAAACCAAGCAGAGCTGaGCGCAGAACAAGAGAACCTGAAACATCAGATGCTCCCTCCATCAGATCTCTCCCTCCAGTGACGCCAATGAGCACCAAGAAGTGTCCAGTCACCAGAGAggaggtgtgtgtgagagaaacatTTGGTCCAGACACGGGCATATCATTGAATTGTGGATCTGCAAATGAGCGCCGATCCCCCGCTGGCTCCAGTCGACCAGGCAGTGCCAAACCAGTCCACACAGGGGCCCATGTAGCACCAGGCCACATGGAGACTACCCCAACCCCTAAACCAAGACCTAGTACTACAGGTGCCCACTCCAAAAATGCCTCCCAGGACACACCACAACACAATGAGACACAGACAATGTCCAAAGGAAACAAACCCATATCAGAACACAAACCTACAGGAAGCCAGCCATCCAACAACACTTCTGTCACAAGGCAAAAAGAGAAACGACAAGAAAAAGAGACACACAGAGAAAAGGATAAAAGATCAAGGACTGAAGGAGATAAACAGACTGTCAGAGAGAAACAGAAAGGCACGGGGAttgagagagacaaagagagattGATGGGCAGGACGAGAAAAAAACTAGCGGAGAAAGAGAAGGAAAAGAGGAGAGACGGCACTTGTAGTAAAAACCAGGCTGCTGTTGTGATACAGAGAGCATGGAGAAGGTCTTGTGTTCGGGGTCGTATTCGCAAGGTATTGTGCAGGTCGTTGAAAGGGGTGGAGTCTGCTGAAGCCACAGCCTTGTTGATTCAGCTGTTGTGGGAGTGGCCTGTCTTACATGACCACACCCACTGTAAGCCATCTGACGTTCAGGCTCCTCCTATCAGGATCGCAGGGAAAAAGAGCTCCGTGCTGCAGAATATCTATGGTGCTGCCCCATCCAAAAGAGGGACCTCTCTACGGGCGACAGCTCTCAAAACACAGAGCCAGAGCCAAAGCCAAGTTTTGCTGGATCTGTCACTCAGAACACATAAGCAGCTGAGCGCCGTGGAGTGTGTGAATCTAGTTGATTCTGTCAGTCAGGCCAAGCAATTCTCTTACCATCTACGGCCATCCAGTGGTGCCAGTCAAAGCAGTCAGAACCgaataaaaaaatgacacaaaacGCACACCaacgtgtgtgtttctgcaggaaCTAAATCTGGAATGATCTGCACTTTTACACTAAAGCACGAGGTACAGTATTGTCTGCGTTTACACGTTAAATCTGCAGCATCACCTCGATTATTGCAGAGGTTAGAGGTTAAAACCACAAACACAACAAATGTATTAGATAACCTTTCATTCTGTCGACAACAGGTCATATACCTGTCGTAAGGGTGACATACGCCTTACGTAACAAGACCACCTGCATGGGAGACCACTGAGTGCTTATATGTACAGTAAAAGTCGGCGCTCTGaaacatgcttttattttcaGCCTGTTGCTAAATGTTGTCACAGATGTCTGTTATATTCTTGTATTCTATTGTTGTCTTTTTACTGAGAAGTTATAATTGTTTTATCGGTCTCTATAGACCAGTGTACTCTTTGTATTATATTAaggtgttatttttaaatatattttgtacaaATGGAAA
>TCONS_00019865
ATCAGAGCTGCAAGGGGGACCTGCGGCCACGCCAAGCCCCAGCAAGGCTTCACTTAGCTGTGTAACATCTGCTGACGCCTCCCTGCGTCCAGGACATCACTATGgcAATGCTGCTCCCCCAGAATCCATCTCAGGTACATGCGGCCGCTGTGAACGGAGACAAGAACACCTTGCAGAAACTGATCACAGAATCTGCTCTGCGGGACAGTGAGGATCAGTTCGGCCGGACTCCTCTGATGTATTGTGTTCTGGCTGACCGTTTGGACTGTGCAGAGGTGCTGCTTAAGGCCGGCGCCGCCATCAACAAAACTGACCACAGTCAGAGAACTGCCCTGCATCTCGCTGCACAGAAGgGCAACGTGCGTTTCATGAAACTCCTACTGTCACGTCATGCTGATTGGCGATTGAAAGATCTGGAGGAAATGACTCCATTACACCTGGCATCCCGTCATTCCAGCTCTAAACCTTTGTCTCTGCTCCTCAAACACATGGCGCCCGGTGAAGTGGACACACAGGACAGGAATAAGCAGACGGCGTTGCACTGGAGCGCTTTCTACAATCACCCCGAGCATGTAAAGCTGCTGATCAAGCATGATTCAAACATCGGCATCCCAGACAGCGAAGGCAAGATCCCTCTACACTGGGCAGCACACAACAAACACCCCAATGCCACCCGGACAGTGCGCTGTATCCTGGAAGCTGCTCCAACAGAGTCTCTGTTGAACTGGCAGGACTATGAGGGACGGACCCCTCTGCATTTTGCAGTGGCTGATGGGAATGAGGCAGTGGTTGAGGTCCTGACGTCATATGAAGGTTGCAGCGTTACAGCTTATGATAACCTGTTCAGGACACCACTGCACTGGGCGGCACTGCTGGgtcATGCAAAGATTGTCCACCTGCTGTTGGAGAGGAATAAGTCTGGGATGATCCCATCAGACAGTCAGGGAGCAACACCACTGCATTATGGAGCTCAGAGCAACTATGCAGACACCGTTGCAGTGTTTCTGAAACACCACTCTGTAAGAGATGAGCCTGACCTAGAGGGACGAACCGCCTTCATGTGGGCCGCTGGGAAAGGCAGTAATGATGTCATCAAAATCATGCTGGATTTGAAAAAAGACATAGACATCAACATGACAGACAAATATGGAGGGACAGcTCTTCATGCGGCTGCACTGTCAGGTCATGTGTCCACTGTGCGCTTGCTGCTGGAGCAGGGAGGAATGGTGGACCCACTGGACGTCATGAAACACACCCCTCTATTTCGTGCGTGCGAGATGGGCCATCGAGATGTCATACTAACACTCATTAAAGgaggtGCTCGTGTTGATCTAGTAGACATAGATGGGCACTCTGCACTGCACTGGGCAGCTCTGGGTGGTAATGCAGAGGTGTGTGAGGTGCTAATGGAGAATGGGATCAGTCCTAACCTGCAGGACCAAGCTGGACGGACACCCTTACAGTGTGCAGCGTATGCTGGCTACATAAACTGCATGGCCTTGCTCATTCAGCACGATGCAGACCCTAATATTCAGGACAAGGAGGGGAGAACCGCACTCCACTGGTCCTGTAATAATGGTTATCTGGATGCTGTGAAGCTGTTGCTGGGGTGTGGGGCATTTCCCAATCACATGGAGCACACTGAAGAGAGgtACACTCCTCTGGACTACGCTCTTCTGGGTGAGCATCAGGAACTGACTCAGTTCCTCCTGGAGCATGGAGCTCTGTCCATCGCCGCCATCCAGGACATCGCTGCCTCCTCTATCCAGGCACTTTACAAAGGCTACAAGGTCCGGCGGGCCTTCAGGGAACGCAAGAAGCTCCTCATGCGACACGAACAACTGCGCAAGGATGCTGCCAAGAAGAGGGAGGAAGAACGCAGGCGTGAGGCAGAGCAGCAGCTCTCGTTGGCTGAGGCAGGTCAGAAGCAGCGTGTCTTATTGGCTGCAGTCGGGGTGGAAAAGCTATCACTGGATGAAGCCGAGCAGAGGTTTAAAGATTCAGTGGCGGCAAAAGGACACAAACACAAAAAGTCCTCCAGTGCTCATAATAGTCAGAGCAGGAGAGAGAAACCAAGCAGAGCTGaGCGCAGAACAAGAGAACCTGAAACATCAGATGCTCCCTCCATCAGATCTCTCCCTCCAGTGACGCCAATGAGCACCAAGAAGTGTCCAGTCACCAGAGAggaggtgtgtgtgagagaaacatTTGGTCCAGACACGGGCATATCATTGAATTGTGGATCTGCAAATGAGCGCCGATCCCCCGCTGGCTCCAGTCGACCAGGCAGTGCCAAACCAGTCCACACAGGGGCCCATGTAGCACCAGGCCACATGGAGACTACCCCAACCCCTAAACCAAGACCTAGTACTACAGGTGCCCACTCCAAAAATGCCTCCCAGGACACACCACAACACAATGAGACACAGACAATGTCCAAAGGAAACAAACCCATATCAGAACACAAACCTACAGGAAGCCAGCCATCCAACAACACTTCTGTCACAAGGCAAAAAGAGAAACGACAAGAAAAAGAGACACACAGAGAAAAGGATAAAAGATCAAGGACTGAAGGAGATAAACAGACTGTCAGAGAGAAACAGAAAGGCACGGGGAttgagagagacaaagagagattGATGGGCAGGACGAGAAAAAAACTAGCGGAGAAAGAGAAGGAAAAGAGGAGAGACGGCACTTGTAGTAAAAACCAGGCTGCTGTTGTGATACAGAGAGCATGGAGAAGGTCTTGTGTTCGGGGTCGTATTCGCAAGGTATTGTGCAGGTCGTTGAAAGGGGTGGAGTCTGCTGAAGCCACAGCCTTGTTGATTCAGCTGTTGTGGGAGTGGCCTGTCTTACATGACCACACCCACTGTAAGCCATCTGACGTTCAGGCTCCTCCTATCAGGATCGCAGGGAAAAAGAGCTCCGTGCTGCAGAATATCTATGGTGCTGCCCCATCCAAAAGAGGGACCTCTCTACGGGCGACAGCTCTCAAAACACAGAGCCAGAGCCAAAGCCAAGTTTTGCTGGATCTGTCACTCAGAACACATAAGCAGCTGAGCGCCGTGGAGTGTGTGAATCTAGTTGATTCTGTCAGTCAGGCCAAGCAATTCTCTTACCATCTACGGCCATCCAGTGGTGCCAGTCAAAGCAGTCAGAACCgaataaaaaaatgacacaaaacGCACACCaacgtgtgtgtttctgcaggaaCTAAATCTGGAATGATCTGCACTTTTACACTAAAGCACGAGGTACAGTATTGTCTGCGTTTACACGTTAAATCTGCAGCATCACCTCGATTATTGCAGAGGTTAGAGGTTAAAACCACAAACACAACAAATGTATTAGATAACCTTTCATTCTGTCGACAACAGGTCATATACCTGTCGTAAGGGTGACATACGCCTTACGTAACAAGACCACCTGCATGGGAG

Function

symbol description
invs Predicted to enable calmodulin binding activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; opsin transport; and urogenital system development. Located in cilium. Used to study ciliopathy. Human ortholog(s) of this gene implicated in nephronophthisis 2. Orthologous to human INVS (inversin).

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0072116 pronephros formation biological_process
GO:0036372 opsin transport biological_process
GO:0035844 cloaca development biological_process
GO:0007275 multicellular organism development biological_process
GO:0010171 body morphogenesis biological_process
GO:0001822 kidney development biological_process
GO:1904108 protein localization to ciliary inversin compartment biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0097543 ciliary inversin compartment cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-020507-2 Predicted to enable calmodulin binding activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; opsin transport; and urogenital system development. Located in cilium. Used to study ciliopathy. Human ortholog(s) of this gene implicated in nephronophthisis 2. Orthologous to human INVS (inversin).

Ensembl:

ensembl_id ENSDARG00000002213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019864 False 3827 mRNA 0.50 18 27442549 27502702
TCONS_00019865 True 3440 mRNA 0.51 17 27444098 27502481

Neighbor

gene id symbol gene type direction distance location
XLOC_009977 CR848817.1 coding upstream 26737 27415697 ~ 27415812 (+)
XLOC_009976 stx17 coding upstream 37089 27383717 ~ 27405460 (+)
XLOC_009975 nr4a3 coding upstream 72767 27345383 ~ 27369782 (+)
XLOC_009974 sec61b coding upstream 210890 27224068 ~ 27231659 (+)
XLOC_009973 LO017763.1 coding upstream 235752 27206669 ~ 27206797 (+)
XLOC_009979 si:ch211-197h24.6 coding downstream 40606 27543308 ~ 27558896 (+)
XLOC_009980 tmem67 coding downstream 61568 27564270 ~ 27581488 (+)
XLOC_009981 si:ch211-197h24.8 coding downstream 90996 27593698 ~ 27602512 (+)
XLOC_009982 si:ch211-197h24.9 coding downstream 101037 27603739 ~ 27609172 (+)
XLOC_009983 glipr2l coding downstream 112287 27614989 ~ 27622183 (+)
XLOC_009964 BX537166.1 non-coding upstream 798723 26640677 ~ 26643826 (+)
XLOC_009961 NA non-coding upstream 908792 26531777 ~ 26533757 (+)
XLOC_009960 NA non-coding upstream 931440 26509385 ~ 26511109 (+)
XLOC_009984 NA non-coding downstream 337225 27839927 ~ 27873367 (+)
XLOC_009986 NA non-coding downstream 546852 28049554 ~ 28050028 (+)
XLOC_009987 NA non-coding downstream 767313 28270015 ~ 28371330 (+)
XLOC_009989 CR936250.1 non-coding downstream 885344 28388046 ~ 28388163 (+)
XLOC_009994 NA non-coding downstream 1157693 28660395 ~ 28667333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06859191_06877582 NA coding CI01000027 null 6859191 ~ 6877625 (+)