RNA id: TCONS_00019865


Basic Information

Item Value
RNA id TCONS_00019865
length 3440
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_009978
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27442549 ~ 27502702 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGAGCTGCAAGGGGGACCTGCGGCCACGCCAAGCCCCAGCAAGGCTTCACTTAGCTGTGTAACATCTGCTGACGCCTCCCTGCGTCCAGGACATCACTATGgcAATGCTGCTCCCCCAGAATCCATCTCAGGTACATGCGGCCGCTGTGAACGGAGACAAGAACACCTTGCAGAAACTGATCACAGAATCTGCTCTGCGGGACAGTGAGGATCAGTTCGGCCGGACTCCTCTGATGTATTGTGTTCTGGCTGACCGTTTGGACTGTGCAGAGGTGCTGCTTAAGGCCGGCGCCGCCATCAACAAAACTGACCACAGTCAGAGAACTGCCCTGCATCTCGCTGCACAGAAGgGCAACGTGCGTTTCATGAAACTCCTACTGTCACGTCATGCTGATTGGCGATTGAAAGATCTGGAGGAAATGACTCCATTACACCTGGCATCCCGTCATTCCAGCTCTAAACCTTTGTCTCTGCTCCTCAAACACATGGCGCCCGGTGAAGTGGACACACAGGACAGGAATAAGCAGACGGCGTTGCACTGGAGCGCTTTCTACAATCACCCCGAGCATGTAAAGCTGCTGATCAAGCATGATTCAAACATCGGCATCCCAGACAGCGAAGGCAAGATCCCTCTACACTGGGCAGCACACAACAAACACCCCAATGCCACCCGGACAGTGCGCTGTATCCTGGAAGCTGCTCCAACAGAGTCTCTGTTGAACTGGCAGGACTATGAGGGACGGACCCCTCTGCATTTTGCAGTGGCTGATGGGAATGAGGCAGTGGTTGAGGTCCTGACGTCATATGAAGGTTGCAGCGTTACAGCTTATGATAACCTGTTCAGGACACCACTGCACTGGGCGGCACTGCTGGgtcATGCAAAGATTGTCCACCTGCTGTTGGAGAGGAATAAGTCTGGGATGATCCCATCAGACAGTCAGGGAGCAACACCACTGCATTATGGAGCTCAGAGCAACTATGCAGACACCGTTGCAGTGTTTCTGAAACACCACTCTGTAAGAGATGAGCCTGACCTAGAGGGACGAACCGCCTTCATGTGGGCCGCTGGGAAAGGCAGTAATGATGTCATCAAAATCATGCTGGATTTGAAAAAAGACATAGACATCAACATGACAGACAAATATGGAGGGACAGcTCTTCATGCGGCTGCACTGTCAGGTCATGTGTCCACTGTGCGCTTGCTGCTGGAGCAGGGAGGAATGGTGGACCCACTGGACGTCATGAAACACACCCCTCTATTTCGTGCGTGCGAGATGGGCCATCGAGATGTCATACTAACACTCATTAAAGgaggtGCTCGTGTTGATCTAGTAGACATAGATGGGCACTCTGCACTGCACTGGGCAGCTCTGGGTGGTAATGCAGAGGTGTGTGAGGTGCTAATGGAGAATGGGATCAGTCCTAACCTGCAGGACCAAGCTGGACGGACACCCTTACAGTGTGCAGCGTATGCTGGCTACATAAACTGCATGGCCTTGCTCATTCAGCACGATGCAGACCCTAATATTCAGGACAAGGAGGGGAGAACCGCACTCCACTGGTCCTGTAATAATGGTTATCTGGATGCTGTGAAGCTGTTGCTGGGGTGTGGGGCATTTCCCAATCACATGGAGCACACTGAAGAGAGgtACACTCCTCTGGACTACGCTCTTCTGGGTGAGCATCAGGAACTGACTCAGTTCCTCCTGGAGCATGGAGCTCTGTCCATCGCCGCCATCCAGGACATCGCTGCCTCCTCTATCCAGGCACTTTACAAAGGCTACAAGGTCCGGCGGGCCTTCAGGGAACGCAAGAAGCTCCTCATGCGACACGAACAACTGCGCAAGGATGCTGCCAAGAAGAGGGAGGAAGAACGCAGGCGTGAGGCAGAGCAGCAGCTCTCGTTGGCTGAGGCAGGTCAGAAGCAGCGTGTCTTATTGGCTGCAGTCGGGGTGGAAAAGCTATCACTGGATGAAGCCGAGCAGAGGTTTAAAGATTCAGTGGCGGCAAAAGGACACAAACACAAAAAGTCCTCCAGTGCTCATAATAGTCAGAGCAGGAGAGAGAAACCAAGCAGAGCTGaGCGCAGAACAAGAGAACCTGAAACATCAGATGCTCCCTCCATCAGATCTCTCCCTCCAGTGACGCCAATGAGCACCAAGAAGTGTCCAGTCACCAGAGAggaggtgtgtgtgagagaaacatTTGGTCCAGACACGGGCATATCATTGAATTGTGGATCTGCAAATGAGCGCCGATCCCCCGCTGGCTCCAGTCGACCAGGCAGTGCCAAACCAGTCCACACAGGGGCCCATGTAGCACCAGGCCACATGGAGACTACCCCAACCCCTAAACCAAGACCTAGTACTACAGGTGCCCACTCCAAAAATGCCTCCCAGGACACACCACAACACAATGAGACACAGACAATGTCCAAAGGAAACAAACCCATATCAGAACACAAACCTACAGGAAGCCAGCCATCCAACAACACTTCTGTCACAAGGCAAAAAGAGAAACGACAAGAAAAAGAGACACACAGAGAAAAGGATAAAAGATCAAGGACTGAAGGAGATAAACAGACTGTCAGAGAGAAACAGAAAGGCACGGGGAttgagagagacaaagagagattGATGGGCAGGACGAGAAAAAAACTAGCGGAGAAAGAGAAGGAAAAGAGGAGAGACGGCACTTGTAGTAAAAACCAGGCTGCTGTTGTGATACAGAGAGCATGGAGAAGGTCTTGTGTTCGGGGTCGTATTCGCAAGGTATTGTGCAGGTCGTTGAAAGGGGTGGAGTCTGCTGAAGCCACAGCCTTGTTGATTCAGCTGTTGTGGGAGTGGCCTGTCTTACATGACCACACCCACTGTAAGCCATCTGACGTTCAGGCTCCTCCTATCAGGATCGCAGGGAAAAAGAGCTCCGTGCTGCAGAATATCTATGGTGCTGCCCCATCCAAAAGAGGGACCTCTCTACGGGCGACAGCTCTCAAAACACAGAGCCAGAGCCAAAGCCAAGTTTTGCTGGATCTGTCACTCAGAACACATAAGCAGCTGAGCGCCGTGGAGTGTGTGAATCTAGTTGATTCTGTCAGTCAGGCCAAGCAATTCTCTTACCATCTACGGCCATCCAGTGGTGCCAGTCAAAGCAGTCAGAACCgaataaaaaaatgacacaaaacGCACACCaacgtgtgtgtttctgcaggaaCTAAATCTGGAATGATCTGCACTTTTACACTAAAGCACGAGGTACAGTATTGTCTGCGTTTACACGTTAAATCTGCAGCATCACCTCGATTATTGCAGAGGTTAGAGGTTAAAACCACAAACACAACAAATGTATTAGATAACCTTTCATTCTGTCGACAACAGGTCATATACCTGTCGTAAGGGTGACATACGCCTTACGTAACAAGACCACCTGCATGGGAG

Function

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0072116 pronephros formation biological_process
GO:0036372 opsin transport biological_process
GO:0035844 cloaca development biological_process
GO:0007275 multicellular organism development biological_process
GO:0010171 body morphogenesis biological_process
GO:0001822 kidney development biological_process
GO:1904108 protein localization to ciliary inversin compartment biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0097543 ciliary inversin compartment cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-020507-2 Predicted to enable calmodulin binding activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; opsin transport; and urogenital system development. Located in cilium. Used to study ciliopathy. Human ortholog(s) of this gene implicated in nephronophthisis 2. Orthologous to human INVS (inversin).

Ensembl:

ensembl_id ENSDART00000157690

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019855 lncRNA upstream 217057 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00019846 lncRNA upstream 661386 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00021946 lncRNA upstream 910341 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 932989 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 948205 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021947 lncRNA downstream 40827 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 41016 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00021949 lncRNA downstream 41101 27543582 ~ 27556789 (+) False XLOC_009979
TCONS_00021950 lncRNA downstream 41107 27543588 ~ 27556789 (+) False XLOC_009979
TCONS_00019872 lncRNA downstream 45014 27547495 ~ 27549982 (+) False XLOC_009979
TCONS_00019861 mRNA upstream 38638 27383717 ~ 27405460 (+) False XLOC_009976
TCONS_00019862 mRNA upstream 51229 27383732 ~ 27392869 (+) True XLOC_009976
TCONS_00019859 mRNA upstream 74316 27345383 ~ 27369782 (+) False XLOC_009975
TCONS_00019858 mRNA upstream 74760 27345383 ~ 27369338 (+) False XLOC_009975
TCONS_00019860 mRNA upstream 80853 27349585 ~ 27363245 (+) True XLOC_009975
TCONS_00019868 mRNA downstream 41064 27543545 ~ 27558896 (+) False XLOC_009979
TCONS_00019871 mRNA downstream 41412 27543893 ~ 27558573 (+) False XLOC_009979
TCONS_00019875 mRNA downstream 61789 27564270 ~ 27581488 (+) False XLOC_009980
TCONS_00019877 mRNA downstream 91217 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019878 mRNA downstream 101258 27603739 ~ 27609172 (+) False XLOC_009982
TCONS_00019863 other upstream 28286 27415697 ~ 27415812 (+) True XLOC_009977
TCONS_00019857 other upstream 212524 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019856 other upstream 218853 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019852 other upstream 237301 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019834 other upstream 800272 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019866 other downstream 40827 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019867 other downstream 41016 27543497 ~ 27555049 (+) False XLOC_009979
TCONS_00019869 other downstream 41101 27543582 ~ 27555102 (+) False XLOC_009979
TCONS_00019870 other downstream 41107 27543588 ~ 27550356 (+) False XLOC_009979
TCONS_00019873 other downstream 47361 27549842 ~ 27555240 (+) False XLOC_009979

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_06859191_06877582.mRNA True 2266 mRNA 0.53 15 CI01000027 6859191 ~ 6877625 (+)