RNA id: TCONS_00019868


Basic Information

Item Value
RNA id TCONS_00019868
length 1545
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_009979
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27543308 ~ 27558896 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGCATCCTTTCTCAAGTTGAAAAACGTCCCGGTTCAACGCAAGCATGGAAGCTAAACCAGCTGGAGCTCGATCTGCAGATTCACTACCAAACCCCAACAAAAGGGGCAAAGGTAGCGGAAAGAAAAAGCAGCTCTTCAATGGTGACATAGTCTTCACCGCTAGGAATGGATCTATCCAGACCATACCCTGCCTAAACAAACGCCTCAAAACAGTCACCGATACTGTTATTGGTCTACAGTACATATGGGAGTATCGAAGCCCATCTAAATCAGTTCCTCCTCATTACCAGTGTAAACTGTGTAGAGTTAATCGGCTGCAGAATGAAATGGCGGCTCATATCACTGGCTGGAAGCACAGCTTTAGATACCTGcaaCAGAACCACCAAGACAAGGTTCCCTATGACGAAGCAGCTGCTCTTAAAGATCCAGCCATCAGGAAAGCTATTAAAACAGCTGCGGCTGAAGTGGAAAAAGCAGAGGGAAGAGGTCAACTAAAGATGGTGTTAAAGGAGCCATTTGACATTGTGGCATTTCAGGACATGAaGTCTGCGCACCCAAATCCAGCATTTCCAGGACCTGCTGGCATTCATACTTCTTCGCCCAGAGGGTTGAAACAAGGTGGTTCATTTGGAGGTCCTTATCAAGATTTTCCTCCCCGGGGTGGCATGATGTCTGACTTCTCTTCTGGCATGCGGGGCGGTATGGACAGTCTCCCAATAAGGGGAGGTTATTCTAATATGAGAGAATTCACTAGCCCCAGTCGCTATGGTAATGGTGGACTAGACAGGGGCATGATGGAAACAGATGACATGCATCGCTTCGCAGATGATGGACCCATGCGCATGGGTCGGGATGGATTTGGAACTGGTCATCATAATGAGGGTATGGGCAGACCTTTCCTAAATGACATGCCCATGAACAGCGGTGGGGAGAGAATGATGGGACTTGGTCCTAAACGCCCAGAGAACAACAGCCTCCCTGCAACACTGCTCAAATACctgGACTCTTTTCGAATTGAAAATGAAGACGATGCTCAGATTGTCTTAAAGGTCACACAGAAGCTTACCGATGTTCTGATGGAGTACCGTCTGCGAAGTATTTCATCGGTGCCCATTGTGAAGCCCCTGCCTGCCATGAACTTTTCATCCTCCTTGCCTTCTCGCAGCTCTAATGACAGATTCTCTGGAAACATGCCAGGCTCATCAAGATTCTACAACTGAACGTTCATCTGATGGATGCAATCAAGACTCTGGTTGCAACCTGCTCTctgtttttgattattatttttgagttttgtttatgaccaaacatcttttttttttctccatgattTTTAGACTgctttgtttttacattgtaaacatagttctgcttattttaaatttttgattTTTCTCTTTCTTCTAGAAACCGATTTTGTATGCTGTTATTTGTAAAAGCaacagtttttagtgtttaaaactCTTTAGAGTCAGTGAAATCCTTAATGTgactgttctgtttctgttgctAAAACTTGTAGAATAAAGTCATAGTCCCTTCC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1361 No description available

Ensembl:

ensembl_id ENSDART00000133398

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019855 lncRNA upstream 316504 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00019846 lncRNA upstream 760833 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00021946 lncRNA upstream 1009788 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 1032436 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 1047652 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00019876 lncRNA downstream 10941 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00021720 lncRNA downstream 281031 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00021952 lncRNA downstream 490658 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021953 lncRNA downstream 711119 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021954 lncRNA downstream 1101499 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00019864 mRNA upstream 40843 27442549 ~ 27502702 (+) False XLOC_009978
TCONS_00019865 mRNA upstream 41064 27444098 ~ 27502481 (+) True XLOC_009978
TCONS_00019861 mRNA upstream 138085 27383717 ~ 27405460 (+) False XLOC_009976
TCONS_00019862 mRNA upstream 150676 27383732 ~ 27392869 (+) True XLOC_009976
TCONS_00019859 mRNA upstream 173763 27345383 ~ 27369782 (+) False XLOC_009975
TCONS_00019875 mRNA downstream 5374 27564270 ~ 27581488 (+) False XLOC_009980
TCONS_00019877 mRNA downstream 34802 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019878 mRNA downstream 44843 27603739 ~ 27609172 (+) False XLOC_009982
TCONS_00019879 mRNA downstream 44852 27603748 ~ 27609172 (+) True XLOC_009982
TCONS_00019880 mRNA downstream 56093 27614989 ~ 27622183 (+) True XLOC_009983
TCONS_00019863 other upstream 127733 27415697 ~ 27415812 (+) True XLOC_009977
TCONS_00019857 other upstream 311971 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019856 other upstream 318300 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019852 other upstream 336748 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019834 other upstream 899719 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019885 other downstream 829150 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019905 other downstream 1458040 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 1657378 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 2443856 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 2521647 30080543 ~ 30080661 (+) True XLOC_010021

Expression Profile

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