Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019858 |
| length | 3244 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_009975 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 27345383 ~ 27369782 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001780 | neutrophil homeostasis | biological_process |
| GO:0071376 | cellular response to corticotropin-releasing hormone stimulus | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0035259 | glucocorticoid receptor binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko05202 | Transcriptional misregulation in cancer |
| ko03000 | Transcription factors |
| ko03310 | Nuclear receptors |
| id | description |
|---|---|
| ZDB-GENE-070824-4 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Acts upstream of or within neutrophil homeostasis. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and spinal cord. Human ortholog(s) of this gene implicated in extraskeletal myxoid chondrosarcoma. Orthologous to human NR4A3 (nuclear receptor subfamily 4 group A member 3). |
| ensembl_id | ENSDART00000078250 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019855 | lncRNA | upstream | 118342 | 27224372 ~ 27227041 (+) | False | XLOC_009974 |
| TCONS_00019846 | lncRNA | upstream | 562671 | 26777473 ~ 26782712 (+) | False | XLOC_009969 |
| TCONS_00021946 | lncRNA | upstream | 811626 | 26531777 ~ 26533757 (+) | True | XLOC_009961 |
| TCONS_00021945 | lncRNA | upstream | 834274 | 26509385 ~ 26511109 (+) | True | XLOC_009960 |
| TCONS_00019830 | lncRNA | upstream | 849490 | 26494756 ~ 26495893 (+) | True | XLOC_009959 |
| TCONS_00021947 | lncRNA | downstream | 173970 | 27543308 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021948 | lncRNA | downstream | 174159 | 27543497 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021949 | lncRNA | downstream | 174244 | 27543582 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021950 | lncRNA | downstream | 174250 | 27543588 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00019872 | lncRNA | downstream | 178157 | 27547495 ~ 27549982 (+) | False | XLOC_009979 |
| TCONS_00019853 | mRNA | upstream | 113724 | 27224068 ~ 27231659 (+) | False | XLOC_009974 |
| TCONS_00019854 | mRNA | upstream | 113815 | 27224369 ~ 27231568 (+) | False | XLOC_009974 |
| TCONS_00019850 | mRNA | upstream | 244908 | 26863414 ~ 27100475 (+) | False | XLOC_009972 |
| TCONS_00019851 | mRNA | upstream | 246988 | 26974599 ~ 27098395 (+) | True | XLOC_009972 |
| TCONS_00019849 | mRNA | upstream | 496065 | 26846495 ~ 26849318 (+) | True | XLOC_009971 |
| TCONS_00019861 | mRNA | downstream | 14379 | 27383717 ~ 27405460 (+) | False | XLOC_009976 |
| TCONS_00019862 | mRNA | downstream | 14394 | 27383732 ~ 27392869 (+) | True | XLOC_009976 |
| TCONS_00019864 | mRNA | downstream | 73211 | 27442549 ~ 27502702 (+) | False | XLOC_009978 |
| TCONS_00019865 | mRNA | downstream | 74760 | 27444098 ~ 27502481 (+) | True | XLOC_009978 |
| TCONS_00019868 | mRNA | downstream | 174207 | 27543545 ~ 27558896 (+) | False | XLOC_009979 |
| TCONS_00019857 | other | upstream | 113809 | 27225184 ~ 27231574 (+) | True | XLOC_009974 |
| TCONS_00019856 | other | upstream | 120138 | 27224536 ~ 27225245 (+) | False | XLOC_009974 |
| TCONS_00019852 | other | upstream | 138586 | 27206669 ~ 27206797 (+) | True | XLOC_009973 |
| TCONS_00019834 | other | upstream | 701557 | 26640677 ~ 26643826 (+) | True | XLOC_009964 |
| TCONS_00019829 | other | upstream | 887769 | 26456210 ~ 26457614 (+) | False | XLOC_009958 |
| TCONS_00019863 | other | downstream | 46359 | 27415697 ~ 27415812 (+) | True | XLOC_009977 |
| TCONS_00019866 | other | downstream | 173970 | 27543308 ~ 27555136 (+) | False | XLOC_009979 |
| TCONS_00019867 | other | downstream | 174159 | 27543497 ~ 27555049 (+) | False | XLOC_009979 |
| TCONS_00019869 | other | downstream | 174244 | 27543582 ~ 27555102 (+) | False | XLOC_009979 |
| TCONS_00019870 | other | downstream | 174250 | 27543588 ~ 27550356 (+) | False | XLOC_009979 |
