XLOC_009972 (galnt1)


Basic Information

Item Value
gene id XLOC_009972
gene name galnt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26863414 ~ 27100475 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019850
GTCTCCGTTAGACCGAGTAGCGGCGCTCAGTGCTTTCAGCCGGAGCGCAGCGCTCATCCCGCGGACGGACTGTCCTCGATCCTCGGCCAATTTACACCATAATTGCCAACGAACAGGCCGCCCCGCGCACACTAAACTAACGGCTTATCATCCTCCTCGGAGCGACACTGCGGATTTTGAGAAAAGCGCTATATTTCGGGCCAGCTCTTTGCTCGATCATGTTTGGGATTAATTTTTGAGGTACTACGATCTGAAGATCACATTTTTTCAGCGTGTGGAGCCTCAGATCTGCACCGGGACGAAGCGGAGGGTTTCTGTTCTCGTCTCGTGCGCTGTCGAAAACAGAAAAGAGAGCATGCGTGAGTAGCAGGATTCTGTGGCTCCTCCCCTCATCTGGAGCCCCTGCGCTGTAGGACACGAGACCCCCTTGCTTCTCCTACTCTAACCTCAGTTCAACAGgtgtgaAGATGAGGAAGTTTGCGTACTGTAAGGTGGTGCTGGCCACCTCTCTGGTGTGGGTGATGCTAGACATGTTCATCCTCCTCTACTTCAGCGAATGCAACAAGTGTGACGATAAAAAGGAGAGAGGATTGCCGGGGAGAGACAccGTGGTTCAGAGGCCTCATGATGGCCCCGGGGAGATGGGCAAACCAGTGGTCATCGCTAAAGACCAGCAGGAGAAGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGCGAGATGATTGCGCTCAACCGATCATTACCGGACGTCCGGCTCGAGGGATGTAAAACGAAAGTGTATCCAGATGATCTGCCGCGCACCAGTGTGGTGATCGTGTTTCATAATGAAGCATGGACCACACTGCTCCGGACGGTGCACAGCGTCATCGACAGGTCACCTAGACACCTGCTGGAGGAGATTGTCCTGGTGGATGACGCCAGCGAGAGAGACTTCCTAAAGCGGCAGCTGGAGCATTATGTGCGGAAGTTGGAGGTTCCTGTGAGGGTGGTGAGAATGGAGCAGCGCTCAGGCCTGATTCGCGCTCGGTTGAAGGGGGCATCAATCTCCACAGGTCAGGTGATCACCTTTCTGGATGCCCACTGTGAGTGCACCACCGGCTGGCTCGAGCCTCTGCTCTCTCGCATCAAACTTGACAAGAAAACCGTAGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGGTTCAACTGGAAGCTGAACTTCCGCTGGTATCCTGTCCCACAGAGAGAGATGGACCGCAGGAAAGGAGACCGAACGCTGCCTGTCAGGACCCCGACAATGGCAGGTGGCCTCTTCTCCATAGACAGAGATTATTTCCAGGAGATCGGCACATATGATGCAGGAATGGACATCTGGGGAGGAGAAAACCTGGAGATCTCATTTAGGATTTGGCAGTGTGGCGGGACGCTTGAGATTGTCACATGTTCTCACGTCGGTCACGTGTTTCGTAAAGCAACGCCTTACACGTTCCCTGGTGGAACTGGGCAAATCATCAACAAGAACAACAGACGGCTGGCAGAGGTCTGGATGGACGAGTTCAAGAACTTCTTCTACATCATCTCACCTGGTGTGACGAAAGTGGATTATGGAGACATCTCAACCAGAACATCCCTGAGACAGAGACTGCAATGCAAGCCCTTCTCCTGGTACCTGGAAAATGTCTACCCAGACTCACAGATACCACGCCACTACTACTCACTGGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAGAAAAGAGAATGAGAAAGTGGGCATTTTCAACTGCCATGGCATGGGCGGTAACCAGGTTTTCTCATACACAGCCAATAAAGAGATCCGAACTGATGATCTCTGTTTGGATGTTTCCAAACTCAATGGCCCGGTTATGATGCTCAAGTGCCATCATTTGAAAGGCAACCAGCTCTGGGAATATGACCCTGTGAAGCTGAGTCTGGTACACGTGAACAGTAATCAGTGTTTGGATAAGGCATCTGAAGATGACAGTCAGGTGCCCAGCGTCAGGGACTGCAGCGGGGCCCGTTCACAGCAGTGGCTTCTCCGCAACGTCACACTGCCCGAAATATTCTGAGATCACACACACAGACGGACAGATGGGGAGACTCTCACAGTGTCGCTGATGTAGAGAGcgcgagagaaaaaaaacaaaaaacaatactgCTTTTCCTCTCAATCCCAGTGGTCTGCCTTCAAAACGATCTGAAAAAACAGAACCGCATATGTAAATGAATCTCCCATCACTCCACCTTGCCGAGGACAACGAACGAATGATGGAGAGAGAGACTCGTGGAGAAAGAAACTTGAGTTTGATGCCCTTATCCTGCTCATTCCTGGAGCAAGCGGGCATTTTGGTTATGTTTACGAGAACGCCTCCCTTTTAGAGTATCagcgtgtgttaatgtgtgtgtgatgcGAATGCGTGAGATGTCAGTCAtgtcttcttttttatttaagtgtttttcaAGCCTTGTAGAAGTGAAGGGTATTTAGCACATGAAGGAAAGGCTGACGTGTGTCTgagtgcatgtgtgcatgtgggATTTAAAGTGTGTCACATATCCAGTGGACGTTCCAGTAGTCTGGTATCCGATTGAAGCAGGGGCTCCCCCTACTGgccacagacatacacacacacacacacgcacatgcacacatactgaCCTGTCTATCAACCTCCGTCTCAGCCAGTGGACTACCTGCAATTCCTCACCGTATTGATTTATCATCAATCAACAGGATGAATGATGAAAATCTAGGATGTGTTTCATATCATCATCGCTaatgtcacttttttttaaaactattttttgttatttttttggattttagGTGCCACATACAAGCACTTTTCacttgttttgctgtttgtttgtttgtttttatttaggaCTTTATGTCAAGTTTGTTTCTTAAAGGTATGATGGTAATTTAAATACACAAAAACCCTGAATTGTTGCCTTCCTCCGGGTTTCCAGCCCTTCGGTCGACATGGTTTAGCGCTTGGGTTGATCGAGAATGGATGGATCATATTTTTTGTCATATCGTTCAACTGTACAAGGGCTCGGTCTCACTGTGTTCATGTGCAAGAAAGAAGTCTTTCGTCTGATATcttcttttggttttgtttacgCTCTCTTTAAATCTGATTCTGTGTAGAATTTGTTTAATTCATCAGTGTATTCGGTGTCTGAAAGTTGCCGCTCAACACATTTCAGCTGATGTCTTCAAATAGTCAGATAGCCTAAAGAGATTGTCACGCATTTCATTCTTTGGATTTTATTTTCATGTGAAAGGAGATTTAATTTCAGCTGCAACGGCTGAAAACAAGAAAACCCATTGTTTTGAGATTTGTCGTGGATTCTGGAATCAGTttttgtttcccttttaaattcTTGACCCTGTCTAAATACTTAAAATGATCTGTACTTTTTGGGTCCTGACCATTATTTTTGACTCTTAATGCATTTCTTATCTTTATATTGATAGAAAGTATGGCACCATGTaccaaaaatattcaaaattgtaaaatattttaaggtaCTAAAGTGTTCAGAAtgcagattaaaaaataaatttaacagATTCTAAATtctaagatgaaaaacagaaaatattctgcagaaaaaaaatattttttatcaagATTTTTCAAACAGACTTTAAAATGCAGATCCTAAAAATAATCATAGATTGTAAATCGTGTGATTCTGCaaattattgtacattttaagaCTGTAAATGCAGATGTTTGATTTTTAACAAACATAATATTCTAAAAACATTTAGGGTTCTAGGTTTTAAAGTAATTATACGTAAAGTTTGAAAAAAATGGCGAAGCTCTAAATTGAGAAAGCAGATTCTAGGTTATAAACTTTATCGTTTGATTTAAAGCGATTGTAGATTCTAATGAATAAGAGTGAAGTTTGACTGCAGAGATTGGTCTTGTAAGTATTTGGACAGGCCTCAAGATCATGTGTAGAGATGTgtgagtgtgaattagtgtgtgtgtttctattcGTCAAAGGgatgtcttttgtttttgtcttatttgttgAACTGATGAGGGTCTGGCCTGCTGAATGGTGGGTTAGAAAGCCCTGTGTCGAGATAATCCACAGGCTGGAGTAATAAACCACAGAAAGTTTACAGTC
>TCONS_00019851
ATGAGGAAGTTTGCGTACTGTAAGGTGGTGCTGGCCACCTCTCTGGTGTGGGTGATGCTAGACATGTTCATCCTCCTCTACTTCAGCGAATGCAACAAGTGTGACGATAAAAAGGAGAGAGGATTGCCGGGGAGAGACAccGTGGTTCAGAGGCCTCATGATGGCCCCGGGGAGATGGGCAAACCAGTGGTCATCGCTAAAGACCAGCAGGAGAAGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGCGAGATGATTGCGCTCAACCGATCATTACCGGACGTCCGGCTCGAGGGATGTAAAACGAAAGTGTATCCAGATGATCTGCCGCGCACCAGTGTGGTGATCGTGTTTCATAATGAAGCATGGACCACACTGCTCCGGACGGTGCACAGCGTCATCGACAGGTCACCTAGACACCTGCTGGAGGAGATTGTCCTGGTGGATGACGCCAGCGAGAGAGACTTCCTAAAGCGGCAGCTGGAGCATTATGTGCGGAAGTTGGAGGTTCCTGTGAGGGTGGTGAGAATGGAGCAGCGCTCAGGCCTGATTCGCGCTCGGTTGAAGGGGGCATCAATCTCCACAGGTCAGGTGATCACCTTTCTGGATGCCCACTGTGAGTGCACCACCGGCTGGCTCGAGCCTCTGCTCTCTCGCATCAAACTTGACAAGAAAACCGTAGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGGTTCAACTGGAAGCTGAACTTCCGCTGGTATCCTGTCCCACAGAGAGAGATGGACCGCAGGAAAGGAGACCGAACGCTGCCTGTCAGGACCCCGACAATGGCAGGTGGCCTCTTCTCCATAGACAGAGATTATTTCCAGGAGATCGGCACATATGATGCAGGAATGGACATCTGGGGAGGAGAAAACCTGGAGATCTCATTTAGGATTTGGCAGTGTGGCGGGACGCTTGAGATTGTCACATGTTCTCACGTCGGTCACGTGTTTCGTAAAGCAACGCCTTACACGTTCCCTGGTGGAACTGGGCAAATCATCAACAAGAACAACAGACGGCTGGCAGAGGTCTGGATGGACGAGTTCAAGAACTTCTTCTACATCATCTCACCTGGTGTGACGAAAGTGGATTATGGAGACATCTCAACCAGAACATCCCTGAGACAGAGACTGCAATGCAAGCCCTTCTCCTGGTACCTGGAAAATGTCTACCCAGACTCACAGATACCACGCCACTACTACTCACTGGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAGAAAAGAGAATGAGAAAGTGGGCATTTTCAACTGCCATGGCATGGGCGGTAACCAGGTTTTCTCATACACAGCCAATAAAGAGATCCGAACTGATGATCTCTGTTTGGATGTTTCCAAACTCAATGGCCCGGTTATGATGCTCAAGTGCCATCATTTGAAAGGCAACCAGCTCTGGGAATATGACCCTGTGAAGCTGAGTCTGGTACACGTGAACAGTAATCAGTGTTTGGATAAGGCATCTGAAGATGACAGTCAGGTGCCCAGCGTCAGGGACTGCAGCGGGGCCCGTTCACAGCAGTGGCTTCTCCGCAACGTCACACTGCCCGAAATATTCTGA

Function

symbol description
galnt1 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2360 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000061335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019850 False 4221 mRNA 0.45 13 26863414 27100475
TCONS_00019851 True 1674 mRNA 0.52 11 26974599 27098395

Neighbor

gene id symbol gene type direction distance location
XLOC_009971 trim35-29 coding upstream 14096 26846495 ~ 26849318 (+)
XLOC_009970 zmp:0000001316 coding upstream 34089 26824691 ~ 26829325 (+)
XLOC_009969 cdh17 coding upstream 60616 26774182 ~ 26802798 (+)
XLOC_009968 gem coding upstream 94087 26766423 ~ 26769327 (+)
XLOC_009966 rad54b coding upstream 105230 26732086 ~ 26758184 (+)
XLOC_009973 LO017763.1 coding downstream 106194 27206669 ~ 27206797 (+)
XLOC_009974 sec61b coding downstream 123593 27224068 ~ 27231659 (+)
XLOC_009975 nr4a3 coding downstream 244908 27345383 ~ 27369782 (+)
XLOC_009976 stx17 coding downstream 283242 27383717 ~ 27405460 (+)
XLOC_009977 CR848817.1 coding downstream 315222 27415697 ~ 27415812 (+)
XLOC_009964 BX537166.1 non-coding upstream 219588 26640677 ~ 26643826 (+)
XLOC_009961 NA non-coding upstream 329657 26531777 ~ 26533757 (+)
XLOC_009960 NA non-coding upstream 352305 26509385 ~ 26511109 (+)
XLOC_009959 CR391910.1 non-coding upstream 367521 26494756 ~ 26495893 (+)
XLOC_009956 BX571761.1 non-coding upstream 451636 26411646 ~ 26411778 (+)
XLOC_009984 NA non-coding downstream 739452 27839927 ~ 27873367 (+)
XLOC_009986 NA non-coding downstream 949079 28049554 ~ 28050028 (+)
XLOC_009987 NA non-coding downstream 1169540 28270015 ~ 28371330 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002426 galnt1 coding CM030136.1 CM030136.1 13728610 ~ 13741394 (-)