XLOC_009971 (trim35-29)


Basic Information

Item Value
gene id XLOC_009971
gene name trim35-29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26846495 ~ 26849318 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019849
ATTGTTGGAGCTGAAACCTGCAGGAGTGAAGCTCTCCATAAGCATGGTTGGTTACTTCTGTGCTAGAGACTTACAACCGCAAAACTCGACTAAGGACTAACAACAGAGAAAATAACTGTTActtaaaagaagaagaagaagaagcagcaacaacaacaacaacgtgaaTCTAAATCACGACTTTAACGCTGAAGAATGGCTTCAGTGAAAACAGTGTCTGTGGAACATTTCTCTTGTCCAGTTTGCTGTAAAATCTACAAGGATCCTGTTGTGCTGTCATGTAGTCACAGTTTCTGTCAAGAGTGTCTTCAAAAGTTCTGGATTACCTGCAACACTCTAGAGTGTCCTGTTTGCAGGAGAAGATCGTCCAGAGATGATCCTCCTTGTAATCTTGTTTTGAAGAACTTGTGTGAGTCACTGACAGCAGACAGAGCTTCAGGATCTGAGCTGGTCTGCAGTGTGCACAATGAGAAACTTAAACTCTTCTGTTTGGATGATGAACAGCCTGTGTGTCTTGTGTGCAGAGATTCACAAAAACACACCAATCACAGGTTCAGACCCATTGATGAAGTTGTTTTATCTTACAAGGAGGAGCTCAAAAAAGGACTGAAGTCCTTTCAAGAGATgcttaaacacaccaaaaacctTAAAGAAAAGTGTGATCAAACAATCCAGCACATCAAGAGTCAGCGTGAGAGCACGGAGCGGCAGATTAAAGAGGAGTTTAGGAAGCTTCATCAGTTTCTGCACGATGAAGAAAAAGCTTCAGTCTCTGCACTGAAGAAGGAGGAAAAGCAAAAGAGTGAGATGACAAAGAAGAAGATTGAGGAGATGAACAGACAAATCTCAGCTCTAGCAGACGTTATAAAAGATATAAAAGAAAAGATGAATGCCAGTGACATTGTATTTCTACACAGCTTTAAAGGCATCAAGGAAAGAGCTCGGAGTTCACAGCAGGATCCACAGATGATTTCAGGAGCTTTGATTAATGTGGCAGATCATCTGAGAAACCTCACCCTCAGAGTCTGGAAGAAGATGCAGCAACTTGTTTACAACACTCCTGTGACTCTGGACCCAAACACTGCAAATTCATGTCTGATTCTGTCCGATGATCTGACAAGTATGAAATGCAGGGCTTGTAGTCAACTGGTTCCTGACAATCCAGAGAGATTTGACCCATATGCTTGTGTTCTGGGTTCAGAAGGCTTTAACTCCGGAACACACTGCTGGGATGTGGAGGTCAAAGACAATTCGGACTGGATTATAGGAGTAACTACAGAATCAAACCAAaggaaaaaagagttttttaaaaCCAACACCTGGTGTGTGGTACAGAGATGAAAAATATTCCACACAGGCTCTAGGGCATTACAACACTTTTTCAGTAAAAGGGAAACTTCAGCGTCTGAGATTAGAGCTGGACTGGGAAAGAGGAAAACTATCATTCTGTGATCCTGTAACCAACACAAATTTACAAACACTCATAATCACCTTCACAGAGAGAGTCTTTCCGTTCTTCTATAGTTCTGATGTTCTTTCTCCTCTAAGGATTTTACCATCTAAAGTTTTTGTGAGTTTTTGGGGAACATAAAAAGGCGGTAACCTGTTAAAGAAGGAATAAATGCGTTTATAAAATTATGTTTGGTTTACGTGCTAAAAAATGCAAATCTAGAATAAGTAGACAATGTTTGAGCTGATCCTgtcatattaaaaatgttaacaatgaaaatgtatttatttttttcccccctcttGTTTCTTACGTGCGGGAGATTAGGAGTTAAAATCAAATTATAGCtaaatagattttaaatgaaAAGATGTAATAAAGCATCAAAATTGTTCCAATAAGGGACTTAGAATTAAGTCAAAT

Function

symbol description
trim35-29 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-35 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDARG00000055730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019849 True 1873 mRNA 0.39 6 26846495 26849318

Neighbor

gene id symbol gene type direction distance location
XLOC_009970 zmp:0000001316 coding upstream 17170 26824691 ~ 26829325 (+)
XLOC_009969 cdh17 coding upstream 43697 26774182 ~ 26802798 (+)
XLOC_009968 gem coding upstream 77168 26766423 ~ 26769327 (+)
XLOC_009966 rad54b coding upstream 88311 26732086 ~ 26758184 (+)
XLOC_009967 fsbp coding upstream 103308 26738404 ~ 26743187 (+)
XLOC_009972 galnt1 coding downstream 14096 26863414 ~ 27100475 (+)
XLOC_009973 LO017763.1 coding downstream 357351 27206669 ~ 27206797 (+)
XLOC_009974 sec61b coding downstream 374750 27224068 ~ 27231659 (+)
XLOC_009975 nr4a3 coding downstream 496065 27345383 ~ 27369782 (+)
XLOC_009976 stx17 coding downstream 534399 27383717 ~ 27405460 (+)
XLOC_009964 BX537166.1 non-coding upstream 202669 26640677 ~ 26643826 (+)
XLOC_009961 NA non-coding upstream 312738 26531777 ~ 26533757 (+)
XLOC_009960 NA non-coding upstream 335386 26509385 ~ 26511109 (+)
XLOC_009959 CR391910.1 non-coding upstream 350602 26494756 ~ 26495893 (+)
XLOC_009956 BX571761.1 non-coding upstream 434717 26411646 ~ 26411778 (+)
XLOC_009977 CR848817.1 non-coding downstream 566379 27415697 ~ 27415812 (+)
XLOC_009984 NA non-coding downstream 990609 27839927 ~ 27873367 (+)
XLOC_009986 NA non-coding downstream 1200236 28049554 ~ 28050028 (+)
XLOC_009987 NA non-coding downstream 1420697 28270015 ~ 28371330 (+)

Expression


Co-expression Network