RNA id: TCONS_00019849


Basic Information

Item Value
RNA id TCONS_00019849
length 1873
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_009971
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26846495 ~ 26849318 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTTGGAGCTGAAACCTGCAGGAGTGAAGCTCTCCATAAGCATGGTTGGTTACTTCTGTGCTAGAGACTTACAACCGCAAAACTCGACTAAGGACTAACAACAGAGAAAATAACTGTTActtaaaagaagaagaagaagaagcagcaacaacaacaacaacgtgaaTCTAAATCACGACTTTAACGCTGAAGAATGGCTTCAGTGAAAACAGTGTCTGTGGAACATTTCTCTTGTCCAGTTTGCTGTAAAATCTACAAGGATCCTGTTGTGCTGTCATGTAGTCACAGTTTCTGTCAAGAGTGTCTTCAAAAGTTCTGGATTACCTGCAACACTCTAGAGTGTCCTGTTTGCAGGAGAAGATCGTCCAGAGATGATCCTCCTTGTAATCTTGTTTTGAAGAACTTGTGTGAGTCACTGACAGCAGACAGAGCTTCAGGATCTGAGCTGGTCTGCAGTGTGCACAATGAGAAACTTAAACTCTTCTGTTTGGATGATGAACAGCCTGTGTGTCTTGTGTGCAGAGATTCACAAAAACACACCAATCACAGGTTCAGACCCATTGATGAAGTTGTTTTATCTTACAAGGAGGAGCTCAAAAAAGGACTGAAGTCCTTTCAAGAGATgcttaaacacaccaaaaacctTAAAGAAAAGTGTGATCAAACAATCCAGCACATCAAGAGTCAGCGTGAGAGCACGGAGCGGCAGATTAAAGAGGAGTTTAGGAAGCTTCATCAGTTTCTGCACGATGAAGAAAAAGCTTCAGTCTCTGCACTGAAGAAGGAGGAAAAGCAAAAGAGTGAGATGACAAAGAAGAAGATTGAGGAGATGAACAGACAAATCTCAGCTCTAGCAGACGTTATAAAAGATATAAAAGAAAAGATGAATGCCAGTGACATTGTATTTCTACACAGCTTTAAAGGCATCAAGGAAAGAGCTCGGAGTTCACAGCAGGATCCACAGATGATTTCAGGAGCTTTGATTAATGTGGCAGATCATCTGAGAAACCTCACCCTCAGAGTCTGGAAGAAGATGCAGCAACTTGTTTACAACACTCCTGTGACTCTGGACCCAAACACTGCAAATTCATGTCTGATTCTGTCCGATGATCTGACAAGTATGAAATGCAGGGCTTGTAGTCAACTGGTTCCTGACAATCCAGAGAGATTTGACCCATATGCTTGTGTTCTGGGTTCAGAAGGCTTTAACTCCGGAACACACTGCTGGGATGTGGAGGTCAAAGACAATTCGGACTGGATTATAGGAGTAACTACAGAATCAAACCAAaggaaaaaagagttttttaaaaCCAACACCTGGTGTGTGGTACAGAGATGAAAAATATTCCACACAGGCTCTAGGGCATTACAACACTTTTTCAGTAAAAGGGAAACTTCAGCGTCTGAGATTAGAGCTGGACTGGGAAAGAGGAAAACTATCATTCTGTGATCCTGTAACCAACACAAATTTACAAACACTCATAATCACCTTCACAGAGAGAGTCTTTCCGTTCTTCTATAGTTCTGATGTTCTTTCTCCTCTAAGGATTTTACCATCTAAAGTTTTTGTGAGTTTTTGGGGAACATAAAAAGGCGGTAACCTGTTAAAGAAGGAATAAATGCGTTTATAAAATTATGTTTGGTTTACGTGCTAAAAAATGCAAATCTAGAATAAGTAGACAATGTTTGAGCTGATCCTgtcatattaaaaatgttaacaatgaaaatgtatttatttttttcccccctcttGTTTCTTACGTGCGGGAGATTAGGAGTTAAAATCAAATTATAGCtaaatagattttaaatgaaAAGATGTAATAAAGCATCAAAATTGTTCCAATAAGGGACTTAGAATTAAGTCAAAT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-35 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDART00000078124

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019846 lncRNA upstream 63783 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00021946 lncRNA upstream 312738 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 335386 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 350602 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021719 lncRNA upstream 366835 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019855 lncRNA downstream 375054 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 693990 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 694179 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00021949 lncRNA downstream 694264 27543582 ~ 27556789 (+) False XLOC_009979
TCONS_00021950 lncRNA downstream 694270 27543588 ~ 27556789 (+) False XLOC_009979
TCONS_00019848 mRNA upstream 17170 26824691 ~ 26829325 (+) True XLOC_009970
TCONS_00019845 mRNA upstream 43697 26774182 ~ 26802798 (+) False XLOC_009969
TCONS_00019847 mRNA upstream 43785 26777473 ~ 26802710 (+) True XLOC_009969
TCONS_00019844 mRNA upstream 77168 26766423 ~ 26769327 (+) True XLOC_009968
TCONS_00019842 mRNA upstream 88311 26741319 ~ 26758184 (+) False XLOC_009966
TCONS_00019850 mRNA downstream 14096 26863414 ~ 27100475 (+) False XLOC_009972
TCONS_00019851 mRNA downstream 125281 26974599 ~ 27098395 (+) True XLOC_009972
TCONS_00019853 mRNA downstream 374750 27224068 ~ 27231659 (+) False XLOC_009974
TCONS_00019854 mRNA downstream 375051 27224369 ~ 27231568 (+) False XLOC_009974
TCONS_00019858 mRNA downstream 496065 27345383 ~ 27369338 (+) False XLOC_009975
TCONS_00019834 other upstream 202669 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019829 other upstream 388881 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 434717 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1504684 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1504952 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019852 other downstream 357351 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 375218 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 375866 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 566379 27415697 ~ 27415812 (+) True XLOC_009977
TCONS_00019866 other downstream 693990 27543308 ~ 27555136 (+) False XLOC_009979

Expression Profile

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