RNA id: TCONS_00019842


Basic Information

Item Value
RNA id TCONS_00019842
length 2532
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_009966
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26732086 ~ 26758184 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTATAAAACTAGatgtattgtttgtattttattatacactTGATCACACATggaagttaaacagtaaaataaaaaataaatgtgcagtATTTCATGGTCATCCATTAATAGGTGCAGGAATGCTATTATTATGTTGTGTTATCGCTGCTGATTcattatctgtttattttaaagcTCACTACTATAGTGTTATATGGTGCAAGGCCTCTTCAAGGAAGCATAAGCGCTGGGAAGGTGATGCTGTGCTTGTTGCCAGAGGGCGAACGGTTGTCCTTAAAGACATGGAGGGCCGGGACATTGGACGAGGTTCAGGTTACAAGGCATCAGAGCTGGAGAGTTTGTGTGAGGGTCAGACTCTTATGGTTGGAGGGAAGCAAATAGAGGTCATGGGGGTCATATCTGATCAAGACTATGCCAAAGGCCGCTGTTTCCAAGATGCGGCTGTCGAGATTCCTACTCCTGCATATCGGCCGGTATCCAAATCCTTTACCAAGCCAGCGCTCAAGGGAGGCGCACTTACAGATTCTGAACTTGACAAACCAATCTGTAAACCTCGATATGACCCGAACGCACCAGGAGCCCTGGTGATGCCACGGCCTACAGCAGATCACCAGTGGCAGTATAATAAATCTGGAGCTCCACTGGTTGACGTGGTCATCGACCCTCACTTGACCAATCACCTTCGGCCACATCAGAAAGAGGGCGTGGTCTTCCTTTACGAATGCTTAATGGGAATGAGATTGGCTGGCCGCTGTGGGGCGATTCTAGCAGATGAGATGGGATTGGGGAAAACTctgcagtgtgtttgtgttttgtggaCATTACTCAGGCAGGGGCCCTATGGTGGACGTCCCGTAATGAAAAGAGCACTTGTGGTTTGTCCTGGAAGTTTGGTGAAGAACTGGGCTGCTGAGTTCAACAAGTGGCTGGGCAGAGAGAGAATCAGTGTTTACACCGTGGACCAGGATCACCGTGTGGAAGACTTTGTTTCTTCTCCTCTTTGCTCCGTCCTGGTCATCAGCTATGAGATGTTGTTGCGCTCTGTGGACCGGCTGAAAGAACTGGATTTTGGAGTCCTCATCTGTGACGAAGGTCATCGCCTAAAAAACAGCAACATCAAAACAGCTGGAGCTCTCACAGCCCTCTCATGCACACGCCGGCTTATTTTAACagGTACTCCGGTGCAAAATGATCTGCAGGAGTTTTATTCAATCATCGAGTTTGTAAATCCAGGAATTCTGGGAACATCTGCGGCCTACAGGAAGATTTATGAAGAGCCCATTCTCCGATCTCGCCAGCCCAGCTGCACCGAAGAAGAGCGGTGTATTGGAGAAGAGCGTGCTGCTGAGCTCTTTCGTCTGACAGGTGTCTTTACATTACGCCGCACTCAGGAGATCATTAATCAGTATTTATCTGAGCGGATCGAGTGGACTGTGTTCTGCAAACCCACCGAGCTGCAAATTCGTCTGTACAGGGTACTTCTGTCCACGCGACCCATAAGAGCCTGTTTGTCTGGCtctcacacttacacacacagccCTCACCTTGTATGCATCAACGCCCTTAAGAAACTCTGCAACCACCCTGCACTGCTCTACAACACACTACAGGTACGGATGTTTAAGGAGCTCTTTCCTGAGGAATACTCCACCGGCGCCTTCAGCACAGCAGACTCTGGCAAACTTTTAGTGTTAACAGACCTTCTGTCAGCCATACATTTCTTCTGTCTTTTTCTCCCTAGGGTTGTTTTGGTGTCCAACCACACACAGACTCTTGACTTACTCCAGGACGTCTGTGATCAGATAGGCTATAAATGGTGTCGTCTTGATGGACAGACACCAGTTGGCCAGCGGCAGAAAATTGTTGATTCCTTCAACAGCCCACATTCGTCCAGCTTTCTACTGCTGCTCAGCTCCAAAGCTGGAGGAGTGGGACTAAACCTCATCGGTGCCTCTCACCTCGTTTTATATGATATAGACTGGAATCCTGCCAATGACATACAGGCCATGGCACGAGTGTGGAGAGATGGACAGAAGAAAACAGTTCATATCTACAGATTTCTCACAACAGGTTCCATAGAAGAGAAGATTTATCAGAGGCAGGTGAGTAAACAAGGGCTTTCTGGGACAGTGGTGGACCTGACCAAAAAAGCTGAGCATATTAGCTTTTCGGCTGAGGAGCTGCGAGACCTTTTTAGGTTTGACCCTAATACCACCTGCCTCACACATGACTTACTGAACTGCAAtatctctaaaagcacaacatgtccaaccttgaaTGAGGACACTGGAAGGTCATGTCAGCTGGGTCGCCAAGCCGACAACGCAATATCAGTCCCACAGCGAGTCAGCATGTCTGAGCTCATGCACTGGAGGCATTTTTCAGGAGCTGTTCAATCATATGGTGATATTTACCTAAATCAGGCCTGTAACCACATTACATATGCCTTTCAAAGCACTTCTAAATCCAAAACCACATGGGCCGAAGGCAAATATAGGTGGGGTAATttaccatgggtaatttcctaa

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0015616 DNA translocase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-060810-50 Predicted to enable DNA translocase activity. Predicted to be involved in double-strand break repair via homologous recombination and reciprocal meiotic recombination. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in colorectal cancer and non-Hodgkin lymphoma. Orthologous to human RAD54B (RAD54 homolog B).

Ensembl:

ensembl_id ENSDART00000183552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021946 lncRNA upstream 207562 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 230210 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 245426 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021719 lncRNA upstream 261659 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019827 lncRNA upstream 297424 26443304 ~ 26443895 (+) True XLOC_009957
TCONS_00019846 lncRNA downstream 19289 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00019855 lncRNA downstream 466188 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 785124 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 785313 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00021949 lncRNA downstream 785398 27543582 ~ 27556789 (+) False XLOC_009979
TCONS_00019835 mRNA upstream 23722 26680508 ~ 26717597 (+) False XLOC_009965
TCONS_00019836 mRNA upstream 23881 26680511 ~ 26717438 (+) False XLOC_009965
TCONS_00019837 mRNA upstream 30399 26706519 ~ 26710920 (+) True XLOC_009965
TCONS_00019833 mRNA upstream 106014 26612401 ~ 26635305 (+) True XLOC_009963
TCONS_00019832 mRNA upstream 106509 26601364 ~ 26634810 (+) False XLOC_009963
TCONS_00019844 mRNA downstream 8239 26766423 ~ 26769327 (+) True XLOC_009968
TCONS_00019845 mRNA downstream 15998 26774182 ~ 26802798 (+) False XLOC_009969
TCONS_00019847 mRNA downstream 19289 26777473 ~ 26802710 (+) True XLOC_009969
TCONS_00019848 mRNA downstream 66507 26824691 ~ 26829325 (+) True XLOC_009970
TCONS_00019849 mRNA downstream 88311 26846495 ~ 26849318 (+) True XLOC_009971
TCONS_00019834 other upstream 97493 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019829 other upstream 283705 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 329541 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1399508 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1399776 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019852 other downstream 448485 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 466352 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 467000 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 657513 27415697 ~ 27415812 (+) True XLOC_009977
TCONS_00019866 other downstream 785124 27543308 ~ 27555136 (+) False XLOC_009979

Expression Profile

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