RNA id: TCONS_00019845


Basic Information

Item Value
RNA id TCONS_00019845
length 3326
RNA type mRNA
GC content 0.43
exon number 19
gene id XLOC_009969
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26774182 ~ 26802798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTGACTTGAGCAGGAAGCGCAGCAAGACTGAAACTCTACAGTCTTTTGAGGAGAGGAGCTCTGCTGACAGGTTTTACTGCTTGGGACGATGAGAGGTGCACTTTTGCTACACTTGACCCTTCTCGTCAGCATTgGTCATGGGATTGATCTAGAGGACAAAAAGGGGCCATTAATAGATATGGTTTTAGATGTGCCAGAGGCTACACCTGTGCCTTATGCCTTCTTCAAGTTTACATCTGCAGTTGAAGACGTTTCTTCATACCATGTAAGCGGAGAGACCGAAGATAAGGTCAGGATCTCCTCGGACGGCTGGCTGTACTTGGAGCAACCTCTGGAATGGAGCCCTGAGAAAAAACACCATCTACTTATTGAAGCACTTTCAGAAGATGGTAAAACTCTTGATGGGCCTGCCCGGGTTGTACTGCAAGTGATTGATGTCAATAACAATCCTCCTGTCTTTAGTGAGAGTCAGTACAGTGGCAGTGTTAGAGAGCACTCTCCTGCAggAGTTCCATTCGTGCAGGTGTTTGCTTCAGATGCGGATGATCCCAACACAGAAAACACTCAGCTGAGGTTCAGCATTGTAAATCAAATCCCCATTGTCGGGCAAACATTTTTCTTTGGCATAAATCCAAACAATGGACAGATATTTACAACAGAAGAAGGAGCAGAGTTTCTGAAGGCCAGACCTAGCGTAACGTACAGCCGTGGGGAGGTTCGAGGCAGTCCTGACGTCCTGAAGAAAAAGTTTGAGGACTATTGTATTCCAAAGAACAACATTGCACTGGAGAACAACCccttttacaaatgtgttgaacgTGCAGAAAGAAGAACAGTGAATGTTCTCCAGGATCCTGACTATGCACTGATTGTTCGGGCTGAGGATTTGGGAGGCAACGCTGTGAACTCATTGAGCAGTACGACACGGGTCAATATAGCCATCCTTCAAAACCTCTGGGTCAGTCCTGGACCAATCACCATTATAGAAAATACAGATGAGGAATACCCTATGTATCTTGCCACAatGAGAGCAAATAATCCCACTGCACTGTACAGACTGGAACAGAAAGAAAGACTTTCCTTCCCCTTCACCATCAATCAGGATGGAGACATTTATGTTACCGGTCCACTGGACAGAGAAGAGAAAGAAATGTACATACTGGTAGTCATAGCAGAAGATGAACAGGGTGTGGAGCTGGAAAAACCCATGGAGATTCCTGTGCTGGTGCAGGATGTCAATGACAACCCTCCTATATGTGATGAAGCTTTGTTTGAGGTGCAGGAAAAGGAGCCCGTAGGTAATTCGATTGGTCATCTGCCTGCTCATGACAATGATAAAGAGGGTACACTAAGCTCAGCTTTAACCTACACTCTCCGGAGCCAGACACCCACCAAGCCAAGTGACAAAATGTTCTCCATCGACCCAAACACTGGTGAAATCAAAGTGGCCAATCAAAACTTCCAGAGAAAACAAGTGCCTCAGTATGAGCTCACCTTTGAAGTGACTGATCAAGTTTACCTCACGAAATGTAAAGCAATCATCAAGGTGATCGATATCAATGATGAGATCCCTATCTTCGAGAAAAACGATTATGGAACTTACAGTGTTCCCGAACTGGCTGAAGTGGGCACAACTTTGCTCAACATTAAAGCCACAGATGCGGATGATACAGGAACAGGAAGCTCTAGAGTGGAGTATCACATCACAGCTGGAGACCCTCAGAACCTCTTCGCCATTGAGGTTGATGAAGAGACTGGAGAGGGCAGAGTCTACATCGCTCAGCCACTGGATTATGAGCTCCAGAGCGTCTACAATCTTAAGATTGATGCCCGTAATCCCGAGCCCCTGATCGCAGGAGTGGAATATAATGACAGTTCCACTACATCTGTTGTCATTGAGCTGGTGGACGTGGATGAGCCTCCAAAGTTTGAAGTGGAGGGGCTTAATGTCAATGTGCCAGAAAACATCACGGTTGGAACCCTACTAATGAAAGCTGAAGCCAAGGATCCCGAGGGAAAGACTATCAAGTTTAAGATGGAAGGAGATGAACACAAGTGGTTGGAGCTGAATGTTGACACTGGAGAGCTGAAGACTAAAGCAGCGTTGGACAGAGAGACAGTGGATCATCTCACTCTCACAATCACCGCTTATGAGACCGAGGGAAACAAGATGGAGGCTGAGATGAAGGTGGACATTCATCTGCAGGATGTAAACGACAACTACCCTAAACTCCAGAAGACACAGGGCTTCATCTGCCTTCAGGACATGACCCCCTTGACCCTCACTGCTATGGATAAGGACGCAGACCCCTACGGAGAGCCCTTCACGTTCGCCATCAGCCGAAAATCACAAAACTTTGAGATCAAACCTGTGGATGGAACCTCAGCGAAACTGATCCTGAAGAAGAAACCCTCGACTGAACAGAACGTCACTGTTCCTATCAACATCTTAGACAACGCTGGGCTTGGCATCACACAAAAGTTTGATGTGCGTATTTGTAACTGCACTAAATTGGGCTACTGTTACATCGAGCCAGCTTCTCACAGCTGGAAACTAAGCATGGGCAGCACCATCGGCATCCTGGCAGGAGTATTCGGCGTCATTGGTTTGTTCTTGGGCATTTGTTTGTATCAAATCAAAAAGAAAGATAAGCAGAGAGCCACAGCTGAAGGAGAGACCAAAGCTATGCTCTAAAGTCAACACACAAACATCATTCAGCACACAAACTGACACCCATCACCATAAACACTCACACccttattttgttttatcattacattacattttcattAAACATTCATGTTCAAGATTTGCATAATCGGAAGACATTAACAGTAACTTATTTGCCATGTGGCCTGGTTTTattgcatatatttaaatatttgaccttaatttagatttttttttcaaatgacacaAAATATTTTTCCCCCTGTTCTTAAAGAGAATATAAAACTGAGTGTTTCCTGggaattttaaatatttgtacaatATTTTTGGTACACATAACACGAGTATGTGATATCACATTTCATATGAAGTAAAcctataaaaaatgtaaatcttctATTTATTCCCAATTATCCAAGAATCAGCAAAATGTGTACAAATCTTTCCATGTAAcgcttattttgtgtttttgactttgAATTTGAGAGAATGTCTTGCTGAGGTCAAATGTCGGGATTTATTAAATGCCATTCAATTATGAATAATACAAAAGGCGTTAAAAGCACACACAGAATGACTGCATTTTTTCTTATTCGACTTGTAGAAAACATATTTGTCATTCTGTAAATAAAATTCTACTTTGACCCAGAAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko05226 Gastric cancer
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-030910-3 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within pronephros development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Is expressed in digestive system; intermediate cell mass of mesoderm; mesoderm; and renal system. Orthologous to human CDH17 (cadherin 17).

Ensembl:

ensembl_id ENSDART00000042895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021946 lncRNA upstream 240425 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 263073 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 278289 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021719 lncRNA upstream 294522 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019827 lncRNA upstream 330287 26443304 ~ 26443895 (+) True XLOC_009957
TCONS_00019855 lncRNA downstream 421574 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 740510 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 740699 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00021949 lncRNA downstream 740784 27543582 ~ 27556789 (+) False XLOC_009979
TCONS_00021950 lncRNA downstream 740790 27543588 ~ 27556789 (+) False XLOC_009979
TCONS_00019844 mRNA upstream 4855 26766423 ~ 26769327 (+) True XLOC_009968
TCONS_00019842 mRNA upstream 15998 26741319 ~ 26758184 (+) False XLOC_009966
TCONS_00019838 mRNA upstream 16533 26732086 ~ 26757649 (+) False XLOC_009966
TCONS_00019848 mRNA downstream 21893 26824691 ~ 26829325 (+) True XLOC_009970
TCONS_00019849 mRNA downstream 43697 26846495 ~ 26849318 (+) True XLOC_009971
TCONS_00019850 mRNA downstream 60616 26863414 ~ 27100475 (+) False XLOC_009972
TCONS_00019851 mRNA downstream 171801 26974599 ~ 27098395 (+) True XLOC_009972
TCONS_00019853 mRNA downstream 421270 27224068 ~ 27231659 (+) False XLOC_009974
TCONS_00019834 other upstream 130356 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019829 other upstream 316568 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 362404 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1432371 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1432639 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019852 other downstream 403871 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 421738 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 422386 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 612899 27415697 ~ 27415812 (+) True XLOC_009977
TCONS_00019866 other downstream 740510 27543308 ~ 27555136 (+) False XLOC_009979

Expression Profile

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