CI01000055_06233829_06238021


Basic Information

Item Value
gene id CI01000055_06233829_06238021
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6233829 ~ 6238021 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06233829_06238021.mRNA
TTGGTCCCTTTGTGGTACACAGGAGACAGAGAAACAAAAAAAAATTTAAATTTGTTTTCATGGTGGTTGGCCTCATAATATCCATAAGCCTTTTCCTCAAACTCCTGCAGATGAAACCTGAATTAACAGTATCAAAATTAGTGGAAAGGTCTTTGGAGGAAGCAGTTTCTGACCAGTTGAAACCTGATGATCACAAAGATGATGGTCCTAAAAACAAATGTGGCCTCTCAAAACCATGTTCTGAAGAAGATTTTGCCTTTAAGCTTTACAGCGGTGCAACAAACATCGTTGGACCACAAATATGCTTTGAGGGGAAAATGATAATACAGAAAGACACGCGAGGTAAATGGCTGGGAATTAATATTGCTGTTATCAATGAGGTTGAGGAGTTGATAGAGTTTCTGAAGTCAATCGAGGATGGTTCTCTTGTGTTGATAGCCACTTTTGATGATCCAGCCACAAAACTTAATGATGAAGCAAGGGCACTTATTGCAGAGCTTGGCAGTTCATATATTTCCCAAATCAAATTCAGAGATAACTGGCTCTTTGTGGGAGGGAAGAAAACCATAAACCAAGTCTCTTATGAGGAGGTAAAACGCAATTTAAATCGCTGTATAACGAGAAAAAAAGAAAAGAAAAAGAAAAACTTGGCACATGACGCAAAACATTATATGCGTAAATTGTGCGCATCTTTGAACTCCAAACCGCACGAAGCCACTCCCATCACTTCATCATCGCAGTATGCACAGCGTCAAGTCATGGACCAAAATG

Function

NR:

description
Family with sequence similarity 3, member C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06233829_06238021.mRNA False 771 mRNA 0.39 8 6233829 6238021

Neighbor

gene id symbol gene type direction distance location
CI01000055_06191356_06221464 NA coding upstream 12007 6191175 ~ 6221822 (+)
CI01000055_06177831_06186773 MXG coding upstream 47056 6177831 ~ 6186773 (+)
CI01000055_06164325_06174472 MXG, MXD, MX2, MX, MX1 coding upstream 59066 6164325 ~ 6174763 (+)
CI01000055_06154806_06161718 NA coding upstream 71753 6154806 ~ 6162076 (+)
CI01000055_06148933_06151962 NA coding upstream 81624 6148684 ~ 6152205 (+)
CI01000055_06238643_06245138 NA coding downstream 622 6238643 ~ 6245317 (+)
CI01000055_06247679_06298687 CELSR1B coding downstream 9658 6247679 ~ 6299580 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 coding downstream 72096 6310117 ~ 6334801 (+)
CI01000055_06349198_06350625 KCNA6A coding downstream 110390 6348411 ~ 6351516 (+)
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding downstream 118403 6356424 ~ 6359067 (+)
G240453 NA non-coding upstream 33347 6200138 ~ 6200482 (+)
G240450 NA non-coding upstream 70158 6163361 ~ 6163671 (+)
G240444 NA non-coding upstream 97689 6135903 ~ 6136140 (+)
G240433 NA non-coding upstream 110147 6120554 ~ 6123682 (+)
G240432 NA non-coding upstream 114045 6119544 ~ 6119784 (+)
G240358 NA non-coding downstream 93310 6331331 ~ 6333548 (+)
G240472 NA non-coding downstream 161972 6399993 ~ 6400807 (+)
G240473 NA non-coding downstream 163280 6401301 ~ 6401914 (+)
G240479 NA non-coding downstream 174833 6412854 ~ 6413389 (+)
G240481 NA non-coding downstream 176171 6414192 ~ 6414489 (+)
G240344 NA other upstream 39929 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 145070 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 616238 5614065 ~ 5617591 (+)
G240099 NA other upstream 690017 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 1067182 5162990 ~ 5166647 (+)

Expression


Co-expression Network