CI01000055_06310117_06334586 (GRAMD4B, GRAMD4)


Basic Information

Item Value
gene id CI01000055_06310117_06334586
gene name GRAMD4B, GRAMD4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6310117 ~ 6334801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_06310117_06334586.mRNA
AGGGTTGCCACCCGCCATGTTAAGATAAAGACACAGATCTCTGTGTTGAACATGCTAAAGCGACTGGATAAGATAAGGTTCAGAGGACCGAAGCGAGATGAGTTCCTGGACCTTGCCGAGTCCCCCAACGCATCTGACAGCGAATGTAATGACGACATCCCAGTAAAACACCGGAGCTCCATCAAAGACACGGAAGAGCAGCGAGACCCTGCTGGTTCGGGGACTCTCACCATGTCTGCTCCTCCCATCCAGGACTACAAAATGTGTGATTCAGACCGACTCAATGAGGTCAAAGGTCATCTGGAGATAGCCTTACTGGAAAAGCACTTTCTTCAGGAGGAGTTGAGGAAGCTCCGAGAGGAGACAAATGTCGAGACCCTGAAGCTGGAGCTGGAGAAAGAGAAAACGAAAAGAGTCGATCTCGAGCAGAAAATGAGTGAAATTCTCAGATCCAGACTAGAAGATTCACCACCTCCACCTCCAAAGCCACAAGTCACTTCAGTCAATGGAACAGGGGACAAACAGAAGGAGACCTTAAGCTCTCGGCTGTGGAAATGGCTCTATGAGCGCTTTGGTGTTTATATCGAAGACTTCCGCTTTCAGCCTGAGGAGAATACAGTCGAGACTGAGGAACCACTAAGTGCTAAAAGATTAACTGAAAATATGAGACGACTCAAACGGGGTGCTAAACCTGTAACTAACTTCATGAAGAACCTTTCTGCCTTATCCAGCTGGTACTCTGTCTACACGTCAGCCATCGCCTTTATTATCTATATGAATGCTGCCTGGCATGGCTGGGTTATCCCCATGTTTCTATTTTTAGCCATTCTGCGGTTGTCCTTGAATTACCTCATAGCAAAGTACGTCCGACATAATCTATCACTGGTTCAATTCACAACTACTGATCTCAGGAGTCCACATGCAGCTGAGCCTCTGACCCATCATTCACTGTGCTATAGGTCAACACTGCTGCTTGGCTCAATGGCATTCACTGGTTTTATCACGATTGACGAGCTTCCCCCACATGGGTGCTGTTTTTGGGGCCCTCAAGTGCTGATCTATGATCAATTCTGTTCTTTATCTGGTGAGGAGTTAAAGGATGGCATTGATCCTTCATTGGCACACAGGAACCTT

Function

symbol description
gramd4b Predicted to be involved in negative regulation of toll-like receptor 9 signaling pathway and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD4 (GRAM domain containing 4).
gramd4 Involved in positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in mitochondrion.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_06310117_06334586.mRNA False 1134 mRNA 0.47 9 6310117 6334586

Neighbor

gene id symbol gene type direction distance location
CI01000055_06247679_06298687 CELSR1B coding upstream 10537 6247679 ~ 6299580 (+)
CI01000055_06238643_06245138 NA coding upstream 64800 6238643 ~ 6245317 (+)
CI01000055_06233829_06238021 NA coding upstream 72096 6233829 ~ 6238021 (+)
CI01000055_06191356_06221464 NA coding upstream 88295 6191175 ~ 6221822 (+)
CI01000055_06177831_06186773 MXG coding upstream 123344 6177831 ~ 6186773 (+)
CI01000055_06349198_06350625 KCNA6A coding downstream 13825 6348411 ~ 6351516 (+)
CI01000055_06357064_06359067 KCNA1A, KCNA1L, KCNA1.S, KCNA1 coding downstream 21838 6356424 ~ 6359067 (+)
CI01000055_06377893_06381162 TMEM178B coding downstream 43168 6377754 ~ 6381215 (+)
CI01000055_06420746_06423701 NA coding downstream 85578 6420164 ~ 6424149 (+)
CI01000055_06424643_06428152 TNNI1AL coding downstream 89879 6424465 ~ 6428321 (+)
G240453 NA non-coding upstream 109635 6200138 ~ 6200482 (+)
G240450 NA non-coding upstream 146446 6163361 ~ 6163671 (+)
G240444 NA non-coding upstream 173977 6135903 ~ 6136140 (+)
G240433 NA non-coding upstream 186435 6120554 ~ 6123682 (+)
G240472 NA non-coding downstream 65407 6399993 ~ 6400807 (+)
G240473 NA non-coding downstream 66715 6401301 ~ 6401914 (+)
G240479 NA non-coding downstream 78268 6412854 ~ 6413389 (+)
G240481 NA non-coding downstream 79606 6414192 ~ 6414489 (+)
CI01000055_06487661_06489302 NA non-coding downstream 153419 6487661 ~ 6490167 (+)
G240344 NA other upstream 116217 6163860 ~ 6164011 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other upstream 221358 6087034 ~ 6088759 (+)
CI01000055_05614889_05616453 NA other upstream 692526 5614065 ~ 5617591 (+)
G240099 NA other upstream 766305 5525472 ~ 5544153 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 1143470 5162990 ~ 5166647 (+)
G240358 NA non-coding upstream 776 6331331 ~ 6333548 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location