CI01000091_00359388_00360200 (CLDNA)


Basic Information

Item Value
gene id CI01000091_00359388_00360200
gene name CLDNA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 358589 ~ 360617 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000091_00359388_00360200.mRNA
CTATATAGTACTGCAGTGGCTTCAGGAAAGATTCCACCTCTTTCTCTGGACATTGGAAACCAGGTCAGCATTCTACTGCATGCTTTTTTCCTTGTTTCTTTAGAATTTCTACTATTTAGAAAAATTATTTGGAAGAATGGAAGATTGTGGAGCTTCAAGTAGTGTCCATCTTAATCTTTCTGCTTTCACTGTTTATGTCTTTTTGTGAGATAAAAAATAATATGTAAGAGAAGTAGCCTATTGGTGAGATGGTGGCATGAAATATGCTTTGCTAGAAATGACTAATTCTGTAAAACTCATTAAAACTGTCTTCATTTAATGGTCGCATAATTATCTCTAAGTAGAGATAAAATGTGTGATATCTTTTGCATTATGGAAAATCCGCCTCCTAAGCTAAAGCTTCAGCAGCAATTAGTGAAGACAAAAGACAGTGAATCAATATTAAGTGTCTTTTGGGTGTGTGTTTTAGAGGGTAAATCGATATTTTAAAATCCTATAATACAAATCATGCTCTTTTAAACTTTAAAACATATTGCCCAGAGTTAATTATGTTACTTCGTCTTTCATAACCCTTCACAAGCCTTGGGACGCCCATGTTCTATTATATATTTGTGTCTGCCTTGTTTCTTTAGTCTTCACTTATGGATTACTCCTATTATTGAACCATGAATCATGTTATTTTCCACAAAAACTATGAATAACTATGAATTTATGATTCATAAAATGTCCTATTCAGCAAAAAGAAATCCACCCTTTCACTCACTCGTGTTAAGACTCGCCCTTGGGATTTGCTTGAGCGATGACACCACAGGCCAGGGGGCAAATCAGTGACGATGTACCTGAGAGTGACTCTGTGCTGCTCCTCCTTGTTTCACATCGCATAAAAGGGCCTGCTTTATTCCCATGTTCACTAAACCAGCTCCTCAGACTGAAGCATATTTTTTCTTTCACTCTCTTTTACTTCAGCACACAAGCAAAGAAGCTTTCTAGCATGGTATCAGCAGGGTTACAGATGCTGGGCATAGCCCTGGCTGTCATTGGCTGGATCGGGGTAATTGTGGTTTGTGTTCTCCCTATGTGGCTTGTCACAGCTTTCATTGGACAGAATATAGTCACAGCGCAAATTACCTGGGAAGGAATCTGGATGAGCTGTGTGGTACAGAGCACTGGACAGATGCAGTGTAAAGTCTACGACTCCATGCTGGCCCTCAGCTCAGATCTACAGGCTGCCCGTGCCTTGTGTATTATCTCCATCCTGGTGGGTGTCGTTGGAATCCTGTTAGCGGCTGCTGGAGGGAAATGCACCAACTGCATTGAAGATGAGAGAGCCAAGGCCAAAGTTGGCATTATTTCAGGAGCTATCTTCATCGTCTCTGGAATTCTGTGTTTGATTCCAGTCTGCTGGACCGCCAACACAATTATAAGGGACTTCTACAACCCTTTAACCGTCAGTGCACAAAAGAAAGAGTTGGGAGCTTCATTGTTTATTGGGTGGGCTGCTTCGGCACTGCTGATTATTGGTGGTTCACTGCTTTGTGCAAATTGCCCTCCCCAAGATCAGTATACCACAAAGTACACTGCTCGGCCTGGAGGAACCAAAGGTTATGTGTGAAGAGGAGCCAAGGACCACTGCAAATAGTGACATTCAAACTAGATAATTTGTGAACATTGTACCTTGGTTAGCTTTTGACCTGTGGTGTTACAATTGACCATGCATGTGAAAGTTCTATCACTGACCACATAGTTGAATTAGCATTCAGCTGCCAAGATATGACAGAAATGGTGAAATACTAAGAATGTATCAGGTCACAGTGCTGAACAGAACAATACTGCCAAAGAAAATGGAATGGGAACTGTAAAAATCTCTTCTTAATGTTGCTGACTGGCTTCACACACTGAGAAGGTGCTTAAACTGTTAAGGATTTATATAAAATGTACATGTAATCATATTGTTTTTTTGTTTTTTTTTTAATTGTGACAGATTTCTGTTATATGCTACAAAACATTTCAACTATGTGCATTGTAACAA

Function

symbol description
cldna Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including gonad; nervous system; otic epithelium; otic vesicle; and spleen. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4).

NR:

description
Claudin a

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000091_00359388_00360200.mRNA True 2029 mRNA 0.40 1 358589 360617

Neighbor

gene id symbol gene type direction distance location
CI01000091_00309199_00325636 NA coding upstream 32718 308968 ~ 325871 (+)
CI01000091_00277114_00290224 PPP5C coding upstream 68365 277114 ~ 290224 (+)
CI01000091_00247680_00252574 NA coding upstream 105860 246921 ~ 252729 (+)
CI01000091_00192431_00197288 NA coding upstream 161121 192431 ~ 197468 (+)
CI01000091_00161029_00165225 NA coding upstream 193107 160989 ~ 165482 (+)
CI01000091_00366037_00366669 NA coding downstream 5420 366037 ~ 367204 (+)
CI01000091_00368135_00368878 NA coding downstream 7518 368135 ~ 368939 (+)
CI01000091_00370016_00370645 CLDNE coding downstream 8363 368980 ~ 371044 (+)
CI01000091_00375689_00376318 CLDNE coding downstream 14790 375407 ~ 376639 (+)
CI01000091_00382012_00384325 CLDNJ coding downstream 21158 381775 ~ 384589 (+)
G302630 NA non-coding upstream 11616 344248 ~ 346973 (+)
G302636 NA non-coding upstream 23499 334525 ~ 335090 (+)
G302634 NA non-coding upstream 24657 333688 ~ 333932 (+)
G302631 NA non-coding upstream 50437 307932 ~ 308152 (+)
G302611 NA non-coding upstream 88894 269406 ~ 269695 (+)
G302653 NA non-coding downstream 33069 393686 ~ 393891 (+)
G302680 NA non-coding downstream 230476 591093 ~ 591568 (+)
G302688 NA non-coding downstream 252597 613214 ~ 613703 (+)
G302690 NA non-coding downstream 254788 615405 ~ 615789 (+)
G302696 NA non-coding downstream 275907 636524 ~ 636744 (+)
G302512 NA other upstream 296422 59635 ~ 62167 (+)
G302679 NA other downstream 226295 586912 ~ 589526 (+)
G302768 NA other downstream 595293 955910 ~ 957032 (+)
G303132 NA other downstream 692006 1052623 ~ 1053014 (+)

Expression


Co-expression Network