G302538


Basic Information

Item Value
gene id G302538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 151038 ~ 151561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU343637
TAAACAGGTTCTCCCCACTCAGTGATACACCCACTGAGAATCCTGTTGAAAGTGCCCTAGTTATTGGCGATTCTATTACACGGAACGTGAAAATAGAGACACCAGCCACCATAGTCACATGTTTGCCGGGAGCCAGAGCACCTGACATCAAAGCAAATTTAAAAGTGCTGGCTAATGCTAATCGTAAATACTCTAAGATTATTATTCACGTCGGCACTAATGATGTTCGACTTCGCCAGTCGGAGATCACTAAAATTAACATTAAAGAGGTGTGTGAACTCGCAAGTACAATGTCAGGAGAAGTAATTTGCTCTGGCCCCCTTCCTGTTCGTCGGAGTGATGAGATAGTTAGCAGATTATCATCACTCAATGGCTGGCTGTCTAAGTGGTGTCCGCAAAATAATATAGGTTTCATAGATAATTGGAAAAGTTTTTGGGGCAGACCTGACCTGTTAAAAAGAGATGGTATTCATCCCTCCCGGGATGGTGCTGCTCTTCTCTCT
>TU343641
TAAACAGGTTCTCCCCACTCAGTGATACACCCACTGAGAATCCTGTTGAAAGTGCCCTAGTTATTGGCGATTCTATTACACGGAACGTGAAAATAGAGACACCAGCCACCATAGTCACATGTTTGCCGGGAGCCAGAGCACCTGACATCAAAGCAAATTTAAAAGTGCTGGCTAATGCTAATCGTAAATACTCTAAGATTATTATTCACGTCGGCACTAATGATGTTCGACTTCGCCAGTCGGAGATCACTAAAATTAACATTAAAGAGGTGTGTGAACTCGCAAGTACAATGTCAGGAGAAGTAATTTGCTCTGGCCCCCTTCCTGTTCGTCGGAGTGATGAGATAGTTAGCAGATTATCATCACTCAATGGCTGGCTGTCTAAGTGGTGTCCGCAAAATAATATAGGTTTCATAGATAATTGGAAAAGTTTTTGGGGCAGACCTGACCTGTTAAAAAGAGATGGTATTCATCCCTCCCGGGATGGTGCTGCTCTTCTCTCTAGTAATATGGCACATANNNNN
>TU343636
CGGAACGTGAAAATAGAGACACCAGCCACCATAGTCACATGTTTGCCGGGAGCCAGAGCACCTGACATCAAAGCAAATTTAAAAGTGCTGGCTAATGCTAATCGTAAATACTCTAAGATTATTATTCACGTCGGCACTAATGATGTTCGACTTCGCCAGTCGGAGATCACTAAAATTAACATTAAAGAGGTGTGTGAACTCGCAAGTACAATGTCAGGAGAAGTAATTTGCTCTGGCCCCCTTCCTGTTCGTCGGAGTGATGAGATAGTTAGCAGATTATCATCACTCAATGGCTGGCTGTCTAAGTGGTGTCCGCAAAATAATATAGGTTTCATAGATAATTGGAAAAGTTTTTGGGGCAGACCTGACCTGTTAAAAAGAGATGGTATTCATCCCTCCCGGGATGGTGCTGCTCTTCTCTCT
>TU343638
CGGAACGTGAAAATAGAGACACCAGCCACCATAGTCACATGTTTGCCGGGAGCCAGAGCACCTGACATCAAAGCAAATTTAAAAGTGCTGGCTAATGCTAATCGTAAATACTCTAAGATTATTATTCACGTCGGCACTAATGATGTTCGACTTCGCCAGTCGGAGATCACTAAAATTAACATTAAAGAGGTGTGTGAACTCGCAAGTACAATGTCAGGAGAAGTAATTTGCTCTGGCCCCCTTCCTGTTCGTCGGAGTGATGAGATAGTTAGCAGATTATCATCACTCAATGGCTGGCTGTCTAAGTGGTGTCCGCAAAATAATATAGGTTTCATAGATAATTGGAAAAGTTTTTGGGGCAGACCTGACCTGTTAAAAAGAGATGGTATTCATCCCTCCCGGGATGGTGCTGCTCTTCTCTCTAGTAATATGGCACATANNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343637 False 503 lncRNA 0.44 1 151038 151540
TU343641 False 524 lncRNA 0.43 1 151038 151561
TU343636 False 423 lncRNA 0.43 1 151118 151540
TU343638 True 444 lncRNA 0.43 1 151118 151561

Neighbor

gene id symbol gene type direction distance location
CI01000091_00120666_00139417 TGFB1A coding upstream 11253 120666 ~ 139785 (+)
CI01000091_00039550_00086927 NA coding upstream 62853 39232 ~ 88185 (+)
CI01000091_00161029_00165225 NA coding downstream 9428 160989 ~ 165482 (+)
CI01000091_00192431_00197288 NA coding downstream 40870 192431 ~ 197468 (+)
CI01000091_00247680_00252574 NA coding downstream 95360 246921 ~ 252729 (+)
CI01000091_00277114_00290224 PPP5C coding downstream 125553 277114 ~ 290224 (+)
CI01000091_00309199_00325636 NA coding downstream 157407 308968 ~ 325871 (+)
G302535 NA non-coding upstream 2146 148671 ~ 148892 (+)
G302551 NA non-coding downstream 15801 167362 ~ 167582 (+)
G302552 NA non-coding downstream 16314 167875 ~ 168120 (+)
G302554 NA non-coding downstream 18435 169996 ~ 170454 (+)
G302555 NA non-coding downstream 20369 171930 ~ 172323 (+)
G302561 NA non-coding downstream 31237 182798 ~ 183821 (+)
G302512 NA other upstream 88871 59635 ~ 62167 (+)
G302679 NA other downstream 435351 586912 ~ 589526 (+)
G302768 NA other downstream 804349 955910 ~ 957032 (+)
G303132 NA other downstream 901062 1052623 ~ 1053014 (+)

Expression


Co-expression Network