CI01000119_00083351_00089422 (RPS6, RPS6.S)


Basic Information

Item Value
gene id CI01000119_00083351_00089422
gene name RPS6, RPS6.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 83330 ~ 89422 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_00083351_00089422.mRNA
GTATTCGGAATTTTCTTTCAGTCACGTTTGGCTAAAAAGTTTGTCTCACATCGCACAAGTGCATCTCGTGAAATTTCGCTTGCCAATCCAAAAGAGGGCAGCAGGATTGAGCATCTGAGAAGGGTAGTGAGGTTGGGAAATGTAACTCAAGAAAATTCAAACCAACCTTTGAGTATGAGCTTGCAGGACAGTTCTAAGATCTCCAACCCAGCTGTGAACTTAGCTCACAGGTCATCCTCTACAAACGCGAAAGGATTCTGGAATCAGTTCATGTTTCGAGGAAAATCAGACTTCAGATACGTTCTGCCAATTAGGAACATCGAGGTCCGTCAAGAAAAGTGTCGAGCGCTCAGTTTCTCTCAGAGGATCTTCCATGAAAACTGTGAAACGTTGGAGCTTCAAAACAACGTCTGTTTCGGAAAATGTGACACGTCGCCCTCTAGTGGGGAAGACGGAGGTTCCTTTCATTGCGCTGTCTGCTCACCCGTTATCGTCGCTTTCAAGACTCTGAAACTTCAATGCATTGACAACACAGAAATTATAAAAGTTGTAAAAATAATAGAGGATTGTCAATGCAAAACAAAACCAGGACAGCATTCACATCACAACGGCCCTGTTCTGCTCAATATCTCGTTCCCCGCCACTGGCTGCCAAAAGCTGATAGAAGTTGACGATGAGCGCAAACTGAGGATCTTCTATGAGAAGCGCATGGCCACAGAGGTGGCTGCAGACTCTCTGGGTGATGAGTGGAAGGGCTATGTTGTGCGCATCAGCGGAGGCAATGACAAACAGGGCTTCCCCATGAAGCAGGGTGTGCTGACCCATGGACGTGTGCGTCTCCTCCTCAGCAAGGGTCACTCCTGTTACCGCCCTCGCCGTACTGGTGAGCGTAAACGCAAGTCTGTCCGGGGCTGCATCGTCGACGCCAACCTTAGCGTTCTCAACTTGGTCATTGTCAGGAAGGGTGAGAAGGACATTCCTGGGCTGACTGATAGCACTGTCCCTCGCCGTCTGGGACCCAAGAGGGCTAGCAGAATCCGCAAGCTCTTTAACCTGTCCAAAGAGGATGATGTCAGGCAGTATGTGGTCAGGAGACCCCTCACTAAAGAAGGCAAGAAGCCCAGGACAAAGGCACCTAAGATTCAGCGTCTGGTTACGCCCCGTGTGCTGCAGCACAAGCGCAGACGCATTGCTCTCAAGAAGCAGCGTACACTGAAGAACAAGGAGGAGGCCGCAGAATACACCAAACTGCTGGCCAAGAGGATGAAGGAAGCCAAGGAGAAACGTCAAGAACAGATTGCTAAGAGACGCCGTCTCTCTTCACTGAGAGCCTCCACATCCAAGTCAGAGTCTAGCCAGAAGTGAGACATGTGCCTCACAAATAAA

Function

symbol description
rps6 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in liver. Orthologous to human RPS6 (ribosomal protein S6).

GO:

id name namespace
GO:0022605 mammalian oogenesis stage biological_process

KEGG:

id description
K02991 RP-S6e, RPS6; small subunit ribosomal protein S6e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_00083351_00089422.mRNA True 1386 mRNA 0.49 7 83330 89422

Neighbor

gene id symbol gene type direction distance location
CI01000119_00066400_00081145 SMU1B coding downstream 2185 65734 ~ 81145 (-)
CI01000119_00031496_00051755 DTX4 coding downstream 31575 31358 ~ 51755 (-)
CI01000119_00114845_00115792 NA coding upstream 24628 112841 ~ 115792 (-)
CI01000119_00349431_00352033 NA coding upstream 259849 349271 ~ 352033 (-)
CI01000119_00691777_00879449 NA coding upstream 602355 691777 ~ 879449 (-)
CI01000119_00939473_01062625 CFAP58 coding upstream 849889 939311 ~ 1062625 (-)
CI01000119_01161178_01175649 SH3PXD2AA, SH3PXD2A coding upstream 1071058 1160480 ~ 1176657 (-)
G337291 NA non-coding upstream 8140 97562 ~ 98485 (-)
G337292 NA non-coding upstream 9618 99040 ~ 99712 (-)
G337293 NA non-coding upstream 28487 117909 ~ 118181 (-)
G337295 NA non-coding upstream 33003 122425 ~ 122705 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017785 rps6,LOC106609995,LOC106602804 coding CM030131.1 CM030131.1 23348358 ~ 23352278 (+)