CI01000119_00939473_01062625 (CFAP58)


Basic Information

Item Value
gene id CI01000119_00939473_01062625
gene name CFAP58
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 939311 ~ 1062625 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_00939473_01062625.mRNA
GCTGAGGACAGCACTTTGGAAACCATGGACATAGACACCCAGGAGGTTTTAAATGAGTTATCAGGAGATGAAAAATTCGAGAAGTTTCGTGTGGAATATGAGAAGGTCGCCAAAGCTCTGCAGAAGTCCCACATGAATGAAAAGAGACTGATGGCCAAATGCAGGGAGCTGAACGCAGAGATAGTGTCCAACTCTGTCAAATTATCCACAGCCTCGAAACTAGCTGATGAAGATCAAGCCACAATCAGCACCCTAAAAATGGAAATTGACAAGGCCTGGAAAATGGTTGAAGCTTCACATGAAAAGGAGTTGCAGGCAAAAGAAACTATCCAGAAACTAAAGGAGGAAATAACCAATCTCAACAATCTTGTTGAAAAAGGAGCTGAAGTCTTTGAGGGCCAAGAATACAGCATGGGTGATTTGTTAAAGATCAAAGAGGAGCTGACCAATCAGAGAGACAAGCTGCTGTCAGAGGTGGTGACACTCCGGGAGAACCTCACTAAAGCCACTGAGGCTCAGCAGGAGATAGAGGCTGAGAAGAACAAAGCCATGGACATGATTGCTCAGCTCCAGCAGGACATCCAGGTGCGTCAGAATGAGGTTCAACGGGAGACCAGGAGGAAAGAGAAGTTGGAAAAGGAAGTGAAGCAGCTTCAAACTGACCTGGAGTCCAAACAATCAGAGATTAAATCACTGACTCAGCAGAGCCAGCGTCTGCAAGATGATCAGCAGAAACTGGAACAACAGCTCCAGGAGCACAAAATTATAAATGAGAAAACGAGTAAAGAAATGGAACAACTCCAACATCGCAACACTAAACTCCAGCAGGATAATGAACAAAACTCCATCAGCCTAGAGCAACTCTCCCAACAGAACCAACAGCGAGCCTCAGACCTGAAGCACTCTAGAGAGAGACAAAGTCAATCTGCACAACAAGTCCACAAACCAAATTTCCCTATTCTATTTTATTGCAACCTTTCTGTAGTGCTGGCACTCCCAGCTCTCCCTATGAAAGAAGAGGAAGTAACCCAGCTGAAACAGGAGATCGCTAAACTTACAAAAATGAAAGAGGGGGTGCAGAGGAGACTCAGACAGATGCAGGAGCAGAAAGTGGAGACTGTGGAAAGTGCTTCTGAAAACAACCCTATTAGCGAAAAGCCTTTCAAAAAGAAAAAAATGGAGGCCTCAAAAAATCAGATGGAAATGGACAAGAAGGCTATAGATGAACTGGTGCGGGAGAAGGCCATCCTGAATAAGAATATGATCAAGGCGGCGAATGAAACAGACAAACAGCAGACCATTGTTAAGCTACAGGAACAGTCAAAGAAGACTCTGGAACAGGAGATTTTAAACTACAGGGATGAAGCCCAGAAACAGCGAAAGATCATTTACCAGCTGGAGAAAGAGAGGGATCGCTACATAAATGAGGCCAGCGAGCTCACCAAGAAGGTTCTTGAGAATATGGAGGACATTAAACTGAAGGAGATGCAGATATATGAGTATAAGAAGAAAATCGCAGAAGCTGAAACAAAACTGAAGCACAAACAGTCTGTCTATGAGGATGTCAGGACAGAGAGGGACCTCTTCAGCAAGAACCTGATCGAGGCCAAGGATATGAATGCTGAGATGAAACGCAAGGTGAAGAACATGAACCTCGAATTTGAACAGCTGAAAGATGATATCACCATAAAAGAGGTGGCTTTAGACAAGGAGCGGCAGGAGATCCAGCGCATAGAGAGAGAGAGGGAAAATCTCAAGGTTGAGCTACAGAAGATGAGGCAACAGGCTCAAGAGACAAAACAGTTCATTGAGAAACAGGAGGCAGAGGAATGCAAGCTGCTGAAGATCATAACAGAGGCTGATGCTGAGAGGATCCGGCAGAAAAGAGAGCTCGATCAGGTGATAAGTGAGCGTGACCTCCTGGGGACGCAGTTGGTGAAGAGAAACGATGCGCTGAAACTACTATACGAAAAGATCAGAATTCAACAGTCCATCATGAACAAGGGTGATCTTCATTACAACGAAAGAGTGGAGGATATCAGACTCCTGAAGCTAGAGATCAAGAAGCAAAAACGAGAAAAGACCGTCCTCAACAAGACCGTCTCAAATGTGGAGGACCTCAGACAGGAAGTGTTACATATGCAGAGGGAGCTGCAGAAAGAGAGGACAAGATGTCGTGCTCTAGAAGATGAGCTCAACAATCCCTTGAATGTACACCGCTGGAGAAAACTAGAGTCAACTGATCCAAGCACCTTCGAATTGATTCAGAAGATTCATTCTCTGCAACGGAGGCTGATAGCTAAGACTCAGGAGGTTGTGGAGAAAGAGCTTCAGCTACAGATACAGACTCTAATTGTCGCATTATTTGCATTGAGGCAGTGCGATAATAAAAGAGGCACAGAGCATATCATGTCAGTTAATATTCGTGCAGGCAAATCTGGACAGGAAAAAGAGAAACTTTATGTTGAGCTGAAACACATCCTTGCTCGGCAGCCCGGTCCGGAGGCAGCAGAAAAACTGCAGGTTTATCAGCGAACTCTCCGGGAGAAGACCAAACAACTGAAGGCCCTAACAGCTGAGCTCAACATGCACGAGTCCCAGTCAGAAGACTATAAGTATGAAATCGAACGTCTGGCACATGAACTCCAGGAAGTCAAGAAAAAATACCTCGCACAGAAACGGAAAGACCAGGAGTACAGTGTGGAGAAATTGCCTTCCACAGACGGCAGCTTTCAATGTCTATCTGACATTGACATTGATTGCATTAGTATTCAGTTGATAGTAGATGGAAACGTGCCCAATGATGTTCAAAGAGGAATCATTTGTTTGGCTGTTTGCCTGGACTTTAGAGGCACACATTGTGATGTCTGCTGGATTGAAGCCCTCTGCTATGTGGAGAGCTGTGTAATTGCTCTCAGGTCCTGGAATAACAGTGTTTTGAACGAGAGATCCATGATCACTGGAGCACAGTTGAAAGCGAGCTGGATAGTAACAGATGTTCTCTCCTGGGAAATAGGGTCGTACGCTCAGGATGCTTTCTTGCGTTTAACTGCAGTTAGATGGAGTGCAGTGGAATGGAACGTCTCAAGGGAGAAGGAGCGAAGTCTCGCCGCTGCTGGACAGCCTGTGATTCAGCCTCAGCGTCCGGACGGCCCCAGATTCACTGGAGGGGGCTTCAGTTTTAAACAGCACAACAGGATGACACTTCAAGCCCTGGAACAGCAGTCCTGATGCCCACCAGAATCCTCAGAGGACCCTCTTCACCCATCATCGCCTCTTGATAGACCGTATTTTCTTGTATTTATTCAGCTCTATTGGTGCTGGCCAGCTTCTCAGTCAGCTGCAGTAAGCAATGCGCTAAAGTCAGTTCTTTCACGTCTGGAATCAAATAAA

Function

symbol description
cfap58 Predicted to be active in cytoskeleton. Human ortholog(s) of this gene implicated in spermatogenic failure 49. Orthologous to human CFAP58 (cilia and flagella associated protein 58).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_00939473_01062625.mRNA True 3393 mRNA 0.46 24 939311 1062625

Neighbor

gene id symbol gene type direction distance location
CI01000119_00691777_00879449 NA coding downstream 59862 691777 ~ 879449 (-)
CI01000119_00349431_00352033 NA coding downstream 587278 349271 ~ 352033 (-)
CI01000119_00114845_00115792 NA coding downstream 823519 112841 ~ 115792 (-)
CI01000119_00083351_00089422 RPS6, RPS6.S coding downstream 849889 83330 ~ 89422 (-)
CI01000119_00066400_00081145 SMU1B coding downstream 858166 65734 ~ 81145 (-)
CI01000119_01161178_01175649 SH3PXD2AA, SH3PXD2A coding upstream 97855 1160480 ~ 1176657 (-)
CI01000119_01185695_01186597 NA coding upstream 122711 1185336 ~ 1187993 (-)
CI01000119_01195573_01235466 NA coding upstream 131185 1193810 ~ 1235539 (-)
CI01000119_01250861_01260985 NA coding upstream 186881 1249506 ~ 1261077 (-)
CI01000119_01277614_01286844 NA coding upstream 214951 1277576 ~ 1286844 (-)
G337491 NA non-coding downstream 319421 619517 ~ 619890 (-)
G337486 NA non-coding downstream 326192 612802 ~ 613119 (-)
G337481 NA non-coding downstream 343267 595745 ~ 596044 (-)
G337476 NA non-coding downstream 346738 592333 ~ 592573 (-)
G337461 NA non-coding downstream 369673 566785 ~ 569638 (-)
G337645 NA non-coding upstream 10056 1072681 ~ 1072935 (-)
G337687 NA non-coding upstream 143361 1205986 ~ 1207119 (-)
G337674 NA non-coding upstream 153988 1216613 ~ 1226896 (-)
G337673 NA non-coding upstream 210839 1273464 ~ 1276036 (-)
G337675 NA non-coding upstream 251917 1314542 ~ 1315769 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000607 cfap58 coding NC_007112.7 CM002885.2 47831619 ~ 48012257 (+)