CI01000119_01195573_01235466


Basic Information

Item Value
gene id CI01000119_01195573_01235466
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 1193810 ~ 1235539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_01195573_01235466.mRNA
ATGCTTGTGTGCCCTCAATTACAGATTCAGACTCAGATTTCAATTACTCACTGCCATGGATTCATGCTAAAGCATGACCAAGAGGGTTTTGGGGAGATATTTCAGCAAGACCAGCAGTGAGAAACAGAGAGAGACACTGCACATCTGCAATTTGGTTCCCACAACAGCAACTTATAAACTTTACTCAATCTCTCAGTTCTTGCAAATGTTTCTTGCTAATGAGCACAGCCCATTGGGAGTTTCCAGTGAAAGCTCTTACAGGATGCAGATTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAAGATCCCAAAAAACGGATTATCCCTTTTCTTCCAGGCAAAATCCTATTCCGACGAAGTCATGTGAGAGACGTGGCCATGAAAAGACTACGCTTTATTGACGACTATTGCAGAGCGCTGGTCCGGCTTCCTCCCCAGATCTCGCAAAGTGAGGAAGTTCTTCGCTTCTTCGAGACCAAACCAGATGATATCAACCCTCCAGTAGAGGATTATGGATCCAAACGCAAGTCAGATGTCTTCCCTTATGGGCACTTCTTCCACTGTGAGGAAAGGACACGCATTACTTGTCGTTCCCCACATTCTGCTCCTCGTGTGAGAGTCAGATGTGGAGAAGGAAAAACGGAGGCTGGATTGTGGGGTTCTGCTGGAATGGGGTCAGTCAGTCAGGCCCTGGTTTACGTGGCAGAGTGGGTTCAGTGTGACGTCGGACTAGCTAAGCTTGTTTACACAAGACTCAGGGCTCTGTGGAGGAGTGGAGGGGCCATACGGAGAGAGAACGAGAGAGAGGCGTGCGGAACAGATGGGAGTTTTAGGGGAGGAGGGATAGTTTTAGTTTGTGAGGAAAGGCCGTGCTTGCGTATGTATGTGCGGTGTATGTTTGTCTGTTCTACTTCTATTGAAAGGAATGGGCTTAAATAGGTCAGTGTGGTTTTATGGTTAAAAAGTCCTTGTTAATGATGTTTAATGAATGTAGATTGACCACTTAGAGATGTTAGCTACTGGAAAATGACAGGATGTTTCATTTAAATTTGTTCTAGGCATGTTTGGCTGTTTGATGGAGTTGGTTTGTTTTTAGAAATTAATGGAATTATTGTAAAAATGATAGAATTGTGTGTTACTGTGAAAATTATAAATGATAGAAAAGCTGAATTTTCAGTGGCATGAAGGTGTTGGTTGGCATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATACAGTCAAACCAAAATTTATTCAGACACCTTGAATCATTCATTAATACAGTTTATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCTCAGAGTTAAACTGTGTCAGAAAAAAAAAAGATCTTAATTATGTCAGATAACACTTGAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTTCCAAATTTTTATCAGTTTTACTGGTAGTCCACTGTATGAAGAATTTTTGGGTATAATATGTCACAGTTTACTTTATTTTGCTATCCTCATTTACATAAATGAACTATAGTGTCCTGCACCCACTAGTAAAAAAATATAAAAAATGATATCTAGTGTCTGAATAATTTTTAGTTTGACTGTGTATATATATATATATATAGATTTGTGTTGTTTAGCATGTGTTTTGTTTTTTGAAGTGTGCAGTCTTTTCTCTCTCATGTGACCTCTCTGCCAAAACACATTTGGACAGCATATGGTTTGATTTTAGTTTGTTGATATTTTCTTGATTTTGCAGTTATACATGCTGAGCTTTCATAGCCAACAACTGGATCATTTCAAAATATTCTAATCAACATAACCATCTTTAGCGCCCAAAATATCTCCAGTGTGCTGTAGGGAATGCTCATGCCAAGAGATGTCTAAAACCACACAGATTGAAGACTCTTTCAAGGATGTCCATAATGCACAAGTTTTGTATTTTTCTTCAGACATGTTTATTGTAATACTATAGCATGGGTGAAACACAGTTCCTTCCACACAAAAGTAAGAAAGACATATATGTTTCCTGTAATGGAGGGAGGTCGACCATTTGGGGTCAGGAAAGAGACGTAAATTACAGTGAGAGAAACCAAAACAGACGTTCCCTCGGTTCTACCAGTAGTGACCTGAGCTTAATCGCTAGTGTGTGTCTGTGAGTGATGCTGTGTGTGTCTATTTGTCATTGGTGGGAGTGTGAGAGATTGAGAATACATTCATAACAGTGAGTGTTTCAGTGTTTCTGTGTGAAGGAAGGGTCAGAGAGGTGGATAGTTAATATCTGTCAGATGTGAAGAGCTTCACTAAAGGGGCGGATCTGTTCACAGGGGTGTGGAGCATTTGTTAATGATTTGACCTCCAAGGCACTTGAGTCAGTTTAATTCAAACTCCATGAAGTTTTTTCAGATCTCAAGATCAACCCTGAGCTGGGAAGTAGGAAGGATTTTCATGACAAAATTCAATATTCAACACCAATTTCAATACCAAAGCAATATTCAATAGCATCTAATATGCTATTAAAACAACTCTTATATTTAATTTTTAAAGTTAATATATCATTGTATATTGTATAAGTATTAAACAAAATACTATGGAATGTAACATATGTTCGTATTAAGTAAAAAAAGTTTTTCCAAATAATTATTTTAAAGTGATCAGTCAGAAATGAAGAGCATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_01195573_01235466.mRNA True 2703 mRNA 0.38 7 1193810 1235539

Neighbor

gene id symbol gene type direction distance location
CI01000119_01185695_01186597 NA coding downstream 5817 1185336 ~ 1187993 (-)
CI01000119_01161178_01175649 SH3PXD2AA, SH3PXD2A coding downstream 17153 1160480 ~ 1176657 (-)
CI01000119_00939473_01062625 CFAP58 coding downstream 131185 939311 ~ 1062625 (-)
CI01000119_00691777_00879449 NA coding downstream 314361 691777 ~ 879449 (-)
CI01000119_00349431_00352033 NA coding downstream 841777 349271 ~ 352033 (-)
CI01000119_01250861_01260985 NA coding upstream 13967 1249506 ~ 1261077 (-)
CI01000119_01277614_01286844 NA coding upstream 42037 1277576 ~ 1286844 (-)
CI01000119_01289193_01294766 LRRC58A coding upstream 53516 1289055 ~ 1294766 (-)
CI01000119_01297333_01303971 FSTL1A, FSTL1B, FSTL1 coding upstream 61692 1297231 ~ 1303971 (-)
CI01000119_01319695_01320873 GJA8, CX44.1 coding upstream 83244 1318783 ~ 1321201 (-)
G337645 NA non-coding downstream 120875 1072681 ~ 1072935 (-)
G337491 NA non-coding downstream 573920 619517 ~ 619890 (-)
G337486 NA non-coding downstream 580691 612802 ~ 613119 (-)
G337481 NA non-coding downstream 597766 595745 ~ 596044 (-)
G337476 NA non-coding downstream 601237 592333 ~ 592573 (-)
G337673 NA non-coding upstream 37925 1273464 ~ 1276036 (-)
G337675 NA non-coding upstream 79003 1314542 ~ 1315769 (-)
G337688 NA non-coding upstream 143910 1379449 ~ 1450252 (-)
G337680 NA non-coding upstream 182888 1418427 ~ 1426429 (-)
G337679 NA non-coding upstream 194498 1430037 ~ 1432642 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 misc NC_047620.1 CM018566.1 9839096 ~ 9876553 (+)