CI01000119_01289193_01294766 (LRRC58A)


Basic Information

Item Value
gene id CI01000119_01289193_01294766
gene name LRRC58A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 1289055 ~ 1294766 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_01289193_01294766.mRNA
ATGGCTCGTTTCCCAAGCATGGACGACAAGTGTGCTGTTTTACAATTATCACGTATGAATCTGGAAGACTTGAACTTGGATCATCTCACGGAAAGTAAAAGAAATCAAATCCAGCAGCTGCATCTCACTTACAATCGTTTATTACTTCTTCCACCTTCCGTTTGTTTTCTATCCAACCTGGAATATCTGGATATGAGCAATAATGCGCTCACGGTCATACCAGATGACTTTATGCGACTAACAAAACTAAAGACGTTTGTAGCAAAGAACAATCTTCTGAATGAGTCATCGTTCCCTAAGGAGTTTGGAAGCATGCAGGTAGAAACTCTGAATATGAGTGGAAACAGGTTTGAGGATATTCCCACGCAGTTTCTAAAAATGACCACACTACAGTCCCTGTCACTTGGAGGAAACAGATTGAAGAACATCCCTTCAGAAATAGAGAACCTGACCAGACTACACTCCCTGCTCTCTCTCAGTCTCCACAACAACCTGCTGACCTTCCTTCCTCGTGAGATCCTCAGCCTCATCCATTTGCAGGAGCTCAGTCTCCGTGGAAATCCTCTTGTTGTGCGCTTCATCAAGGACATGACCTACGACCCTCCATCCCTGATGGAGCTAGCAGGGCGCACGATCAAGTCCCAGAACCTTCCGTTCCGCTCGTGTGACCTACCATCCAATCTGATCCATTATTTAAACCTGGCTAGCGAATGTCCCAATCCAAAGTGTGCAGTGTTCCTCTCCCTGCAGCTCAAACCCACAGAGCGACGCAGAGTCAGGAGAGGAGGAGAACAGCGTCCCCGCAGACAGACTCCAAAGGGTCAGGTTATGGACTATGATGGCTACTTCACACAGTTCGAGAATGTATGTAAAGCTATCGTCCATGACAACCTTAAAATAGTTACATGCTAAAGAACACTTTTTTTTTTTTTTTTTTGTATTTTGTCTTATTGTCAGAAGTTTGGCTATAGCGACAAGGTTTCAGATCAGTATTAAGCAGTAGTGTTTACTGTCTCTAAAAGAGCTCATAATGGTACTAATAACAATAAA

Function

symbol description
lrrc58a Orthologous to human LRRC58 (leucine rich repeat containing 58).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_01289193_01294766.mRNA True 1050 mRNA 0.44 4 1289055 1294766

Neighbor

gene id symbol gene type direction distance location
CI01000119_01277614_01286844 NA coding downstream 2211 1277576 ~ 1286844 (-)
CI01000119_01250861_01260985 NA coding downstream 27978 1249506 ~ 1261077 (-)
CI01000119_01195573_01235466 NA coding downstream 53516 1193810 ~ 1235539 (-)
CI01000119_01185695_01186597 NA coding downstream 101062 1185336 ~ 1187993 (-)
CI01000119_01161178_01175649 SH3PXD2AA, SH3PXD2A coding downstream 112398 1160480 ~ 1176657 (-)
CI01000119_01297333_01303971 FSTL1A, FSTL1B, FSTL1 coding upstream 2465 1297231 ~ 1303971 (-)
CI01000119_01319695_01320873 GJA8, CX44.1 coding upstream 24017 1318783 ~ 1321201 (-)
CI01000119_01346109_01356546 BCL9 coding upstream 50415 1345181 ~ 1356546 (-)
CI01000119_01464980_01476481 NA coding upstream 169499 1464265 ~ 1476481 (-)
CI01000119_01477397_01480508 CBR1 coding upstream 182092 1476858 ~ 1480508 (-)
G337673 NA non-coding downstream 13019 1273464 ~ 1276036 (-)
G337674 NA non-coding downstream 62159 1216613 ~ 1226896 (-)
G337687 NA non-coding downstream 81936 1205986 ~ 1207119 (-)
G337645 NA non-coding downstream 216120 1072681 ~ 1072935 (-)
G337491 NA non-coding downstream 669165 619517 ~ 619890 (-)
G337675 NA non-coding upstream 19776 1314542 ~ 1315769 (-)
G337688 NA non-coding upstream 84683 1379449 ~ 1450252 (-)
G337680 NA non-coding upstream 123661 1418427 ~ 1426429 (-)
G337679 NA non-coding upstream 135271 1430037 ~ 1432642 (-)
G337754 NA non-coding upstream 208479 1503245 ~ 1503707 (-)

Expression


Co-expression Network