Gene
RNA
| Item | Value |
|---|---|
| gene id | G337645 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000119 |
| NCBI id | null |
| chromosome length | 2769458 |
| location | 1072681 ~ 1072935 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU384016 | True | 232 | lncRNA | 0.36 | 2 | 1072681 | 1072935 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000119_00939473_01062625 | CFAP58 | coding | downstream | 10056 | 939311 ~ 1062625 (-) |
| CI01000119_00691777_00879449 | NA | coding | downstream | 193232 | 691777 ~ 879449 (-) |
| CI01000119_00349431_00352033 | NA | coding | downstream | 720648 | 349271 ~ 352033 (-) |
| CI01000119_00114845_00115792 | NA | coding | downstream | 956889 | 112841 ~ 115792 (-) |
| CI01000119_00083351_00089422 | RPS6, RPS6.S | coding | downstream | 983259 | 83330 ~ 89422 (-) |
| CI01000119_01161178_01175649 | SH3PXD2AA, SH3PXD2A | coding | upstream | 87545 | 1160480 ~ 1176657 (-) |
| CI01000119_01185695_01186597 | NA | coding | upstream | 112401 | 1185336 ~ 1187993 (-) |
| CI01000119_01195573_01235466 | NA | coding | upstream | 120875 | 1193810 ~ 1235539 (-) |
| CI01000119_01250861_01260985 | NA | coding | upstream | 176571 | 1249506 ~ 1261077 (-) |
| CI01000119_01277614_01286844 | NA | coding | upstream | 204641 | 1277576 ~ 1286844 (-) |
| G337491 | NA | non-coding | downstream | 452791 | 619517 ~ 619890 (-) |
| G337486 | NA | non-coding | downstream | 459562 | 612802 ~ 613119 (-) |
| G337481 | NA | non-coding | downstream | 476637 | 595745 ~ 596044 (-) |
| G337476 | NA | non-coding | downstream | 480108 | 592333 ~ 592573 (-) |
| G337461 | NA | non-coding | downstream | 503043 | 566785 ~ 569638 (-) |
| G337687 | NA | non-coding | upstream | 133051 | 1205986 ~ 1207119 (-) |
| G337674 | NA | non-coding | upstream | 143678 | 1216613 ~ 1226896 (-) |
| G337673 | NA | non-coding | upstream | 200529 | 1273464 ~ 1276036 (-) |
| G337675 | NA | non-coding | upstream | 241607 | 1314542 ~ 1315769 (-) |
| G337688 | NA | non-coding | upstream | 306514 | 1379449 ~ 1450252 (-) |
