LOC117596102 (sh3pxd2a,sh3pxd2aa,LOC107692111)


Basic Information

Item Value
gene id LOC117596102
gene name sh3pxd2a,sh3pxd2aa,LOC107692111
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9839096 ~ 9876553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442162
CGGATATTATCAGTATCACAATATGCAGTTTGGACATTATAGATGGCTGTAGAGTAAACAAATCAAACCAGACTTAGATTTTCAAAGCTTGAAATCCATTAAGACTGCAcaagcagtgtgttttgggatATGATTATTTTAGATTGTTGtagtgttgatgtgtgttttgaaatatcattttctttttttttttttttttttttttttccagatgcaGCTTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAGGACCCCAAAAAGCGCATCATCCCTTTTCTTCCAGGTAAAATCCTGTTTCGACGAAGTCATGTACGAGACGTGGCCATGAAGAGACTGCGCTTTATAGATGACTATTGCAGAGCGCTGGTGCGACTTCCTCCCCAGATCTCCCAGAGTGAGGAAGTGCTGCGTTTCTTCGAGACCAAACCAGATGACATGAACCCTCCTGTAGAggACTATGGCACCAAACGCAAATCAGGTTTGATGTATGGCCTACAGGACAGTCCCACCAAGTCTGAGGCCTCAGG
>XM_034299862.1
atgcaGCTTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAGGACCCCAAAAAGCGCATCATCCCTTTTCTTCCAGGTAAAATCCTGTTTCGACGAAGTCATGTACGAGACGTGGCCATGAAGAGACTGCGCTTTATAGATGACTATTGCAGAGCGCTGGTGCGACTTCCTCCCCAGATCTCCCAGAGTGAGGAAGTGCTGCGTTTCTTCGAGACCAAACCAGATGACATGAACCCTCCTGTAGACACCATGGCGTTTAGGAAATCTATGAGCAATGACAGCTCAGTGATTAAACACCAGAGCTCGAACAGGTACCTCACTGACCTCTATGCTTGTGTAAGTGTCCATGTAATTGGAAGCACTCATGTGTGTGCTACTTATGTATATATGaacgaatgtgtgtgtgtgtccacgtttgtgtgtgtgcatgttcttaATTTCGTTTCTTTTTTAGAATTAGTGTAA

Function

symbol description
sh3pxd2aa Predicted to enable superoxide-generating NADPH oxidase activator activity. Acts upstream of or within neural crest cell migration and posterior lateral line neuromast primordium migration. Predicted to be located in podosome. Predicted to be active in cytoplasm. Orthologous to human SH3PXD2A (SH3 and PX domains 2A).
sh3pxd2a Predicted to enable superoxide-generating NADPH oxidase activator activity. Involved in osteoclast fusion and superoxide metabolic process. Located in podosome.

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0042995 cell projection cellular_component
GO:0002102 podosome cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442162 True 531 TUCP 0.43 5 9839096 9876553
XM_034299862.1 False 465 mRNA 0.46 4 9839307 9852433

Neighbor

gene id symbol gene type direction distance location
neurl1aa neurl1 coding upstream 43479 9709334 ~ 9795617 (+)
LOC113537760 LOC108258286,LOC108434669,LOC105891016,LOC106951888,LOC103143885,LOC107566139 coding upstream 593868 9046038 ~ 9245228 (+)
cxcl18b NA coding upstream 965109 8872675 ~ 8873987 (+)
gsk3bb gsk3b,LOC108258646,LOC108434709,LOC107559500,LOC107715908,LOC107551994,LOC107721573 coding upstream 1051287 8755693 ~ 8787809 (+)
atp5md NA coding upstream 1095645 8740530 ~ 8743451 (+)
gja5b LOC108258849 coding downstream 102615 9979168 ~ 9993887 (+)
setd4 setd4 coding downstream 247421 10123974 ~ 10134586 (+)
itsn1 itsn1 coding downstream 265039 10141592 ~ 10192783 (+)
pknox1.2 LOC108258611,LOC108428207,LOC103022264 coding downstream 325174 10201727 ~ 10217459 (+)
agpat3 agpat3,LOC107746273,LOC107676863 coding downstream 388263 10264816 ~ 10286388 (+)
G373226 sh3pxd2a non-coding upstream 29108 9802086 ~ 9809988 (+)
G373227 NA non-coding upstream 39231 9796547 ~ 9799865 (+)
G373261 NA non-coding upstream 46731 9792155 ~ 9792365 (+)
G372783 NA non-coding upstream 867803 8971091 ~ 8971293 (+)
G372724 NA non-coding upstream 976866 8861719 ~ 8862230 (+)
G373399 NA non-coding downstream 91093 9967646 ~ 9968299 (+)
G373439 NA non-coding downstream 226870 10103423 ~ 10103699 (+)
G373453 NA non-coding downstream 297418 10173971 ~ 10174515 (+)
G373474 NA non-coding downstream 400378 10276931 ~ 10277739 (+)
G373538 NA non-coding downstream 634528 10511081 ~ 10574495 (+)
LOC117596101 LOC103370040 other upstream 1368882 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 1685241 8149960 ~ 8153855 (+)
LOC113537319 LOC108258902 other upstream 4269801 5560082 ~ 5569295 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other upstream 4925249 4653715 ~ 4913847 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other upstream 5289330 4536432 ~ 4549766 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other downstream 336480 10213033 ~ 10259531 (+)
G373955 LOC108258951 other downstream 1129455 11006008 ~ 11009620 (+)
LOC113537724 sept3 other downstream 1185463 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 2233018 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 4139970 14016523 ~ 14021131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01195573_01235466 NA coding CI01000119 null 1193810 ~ 1235539 (-)