metap1d (metap1d,LOC107719722,LOC107704334,LOC107699077)


Basic Information

Item Value
gene id metap1d
gene name metap1d,LOC107719722,LOC107704334,LOC107699077
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12109571 ~ 12126195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443794
AAATAAAGACCGTGCAAACATGATCTTTTATAAACTCTCGTTTCAtaccaagaccatatttagccAGACCAATGCCCAAGATTGagacaaatgcaaatgccaaAAAATCCAAGTCCatgtcaatacagaaaacatctcaaGACCGGACGTGATTCCTACAGCCCTAGTAGTAAGATCTTACAGCAAATATTAACatgttttacttaaaaaaaaaatgacaaagtacTACAGAAACAGATGGCAATTTAAAACCCTAAATGCTTGCCCCAAATTTCTAAACCTTTGTTCTGTCAAATATGGCTATTTGCGTTACAAATATGGCTTGGAGAGATAGATACATTTACACTTGTATAGCGTAAAAAATGCATCTCAGACCTACGCTATATTTAAATGATATGTGGATCATTTCCATCTAGATATTACTCCAGGTCACAGGTAGACCTTTGTGAGATTTCAGCAGCTAAATCTTGATTTGTGCTgtcatattttcagtattttcactTGTCAAAATATACCATAACAGCCAaaattactgtattttgttgatcagtaacattagctaagaCATCATGCGGGTTCCAGGTCATCCTCTACTCTCAATCCTGATTGTTTCAAACTTGTGCCAATTACTTAGTGACATCACAAGTTCAGCTTAtacataaatggaaaaaaaaaagttaatttagtAAGTAAGGGGTAAAACACCTgtgggtgtgctgttgtagaaaattaatcagtgactACGGggtgagttactgttacaagaaattgattatttttctaataacagcttgtcgcaaagtgttttattcctcttatagcaatTTGGCACTGGTTATACTTTtgaaattt
>XM_026931996.2
GACGCGCGCGCGCATCACGTGACCCGCAGTGCACAGAAAACATGGCGGCGCCCTGTGTGACAGCGCTGAGGTGTATGTTATTTCAATCAGCCTCCTCAGGCCTCTCACAGAGAGCAGTGCGGTTGCCAGGATGCCAGCGATGCCCATGCAGTGCCCAGTTTCAACAACGCCGCCACTTCTTCTGGAGAAAATGGACGAGTTCACGCAGCGTGGTGCGGCCCGCCGTGGTGCGGCCACCTTACCCAGTACCCAAGcACATCCAGAAGCCAGGCTATGTCTCCTCCAACTCTGTCCCCGAGTGGCCTGACTATATTGAGATTAAGGATGAGGAGCAGATTGAGGGTTTGAGGAGAGCGTGTCAGCTCGCTAGACACATCCTCCTCCTCGCTGGAAGCAGCCTCAAGGTTGGTATGACAACTGATGAAATTGACTTCATCGTGCACCAGGAGACGATCAGACACAATGCCTATCCGTCTCCACTGTACTACGGTGGATTTCCCAAGTCTGTGTGTACATCTGTAAACAACGTGGTGTGTCATGGCATTCCAGACAGTCGGCCACTTCAAGATGGAGATATCATTAACATAGATGTTactGTTTACCTGGAAGGTTACCACGGCGACACCTCAGAGACATTTCTGATTGGTTCCGTGGACAAGCAAGGTAGGAAGTTAGTGGACGTGGCGCGACAGTGTAGAGACAAGGCCATTGCTGCGTGCGGACCGGGAAGCCCGCTGTGTGTCATCGGCAATACAGTCAGTGAAATTGCCCATTCGAATGGTTTCGCCGTGTGTCCATATTTCATCGGCCATGGCATTGGATCTTACTTCCATGGTCACCCCGAGATCTGGCATCATGcCAACGATAATGACTTGCTGATGGAAGAGGGCATGGCCTTCACAATAGagcCCATTCTGATGGAGGGAACCTCTGAATTCAGGATCCTGAGAGACAAGTGGACGGCCGTCTCAATGGATGACAAAAGATCAGCCCAGTTTGAGCACACAGTCGTCATCACCTCTGATGGTGTGGAGATTTTGACCAAATTGCCAGATGAGGACTGAATGTGGTCAAGGAGCTTTTGCGTGTTGTTTGAGTGAAGATTTTATGTGAGGTGTGTAgtgaagtaaaaatattttgtagtgtttaaaCAAGTGttcaaagacaaaaagacaattTTTATTGTTCACAGGATATTCCTGgttaaagaaagaataaaatgtttgtgCTGCGATATTTGTCAGGTAAAGGTGTGCcttatattgtttttgttacCATTTTGACATTTCAGGGGGATTTTATGTTAATcccatttaaaatgtgttcGGTATAAAGCcaagaaagaaatcagcttttttgctgttttgataACTTGCTGTGTCTTTGACTGTTACTTTTCTCTTAAAAAATGAAAGCCTTAAAGCCACTTTTTAGTTTGCTTCCATTAAGCTCAgctaaatatttcattatttcatcacTCTATTAGGAAAGCATATCCTACGTCACTCCTAAAACGTCAGTCCGTCTCGAGATCAGCGCCGGAATGACCAAGAAAACTTCGTTAAGTCTCATTAACATGGCTCACGCTCACTATCTGCTCACGTCATGAGATTACAGTGGAGTAACGTCATTATGTGAGCGCACATCCACCGAGAGGTGATTTTATTTATGGCATATGAGGGCTCCCTGGCATCAGGGGCTTCCTATATAATCAAGTTTAGTAACTGATCATATTTAGGGCTTATGATGAGATTGGACAGGTGGAGCTAAGAGGCTAACAAAACCATGATAGATCTGTTCTTGATGGATGATGCATGACACAAGATTGTATACACAAGGGCATGATATAAATAGAGGCTTCATGCCAAGCAACTCTGTGCATTCACAACTTGATGGAACCACAAAAAATAGGCTTACTAGAGAAGTCTAATGATTTATCTATCTAATGAGGCTCTGTCTCAAATCATTAACTATGCACTATGTTCTTATGCCACACATTGAACATCGTATTGGACTGTCTAATACCAAGAATAGTATAGTAGTAGTATACAAGAATTTTGTATAGTAGTAACTAGGGCTAGTCAAGACTGTCATTGTCAAGTCTAAGACAAGGACTGGCCAAGATCTgtttaaatctaatttaaaaatctaaatctaattaCTTCTTGTTAAACTTTGTGCATGCCATGCGCAAAATAAAGACCGTGCAAACATGATCTTTTATAAACTCTCGTTTCAtaccaagaccatatttagccAGACCAATGCCCAAGATTGagacaaatgcaaatgccaaAAAATCCAAGTCCatgtcaatacagaaaacatctcaaGACCGGACGTGATTCCTACAGCCCTAGTAGTAAGATCTTACAGCAAATATTAACatgttttacttaaaaaaaaaa
>XM_034300417.1
GACGCGCGCGCGCATCACGTGACCCGCAGTGCACAGAAAACATGGCGGCGCCCTGTGTGACAGCGCTGAGGTGTATGTTATTTCAATCAGCCTCCTCAGGCCTCTCACAGAGAGCAGTGCGGTTGCCAGGATGCCAGCGATGCCCATGCAGTGCCCAGTTTCAACAACGCCGCCACTTCTTCTGGAGAAAATGGACGAGTTCACGCAGCGTGGTGCGGCCCGCCGTGGTGCGGCCACCTTACCCAGTACCCAAGcACATCCAGAAGCCAGGCTATGTCTCCTCCAACTCTGTCCCCGAGTGGCCTGACTATATTGAGATTAAGGATGAGGAGCAGATTGAGGGTTTGAGGAGAGCGTGTCAGCTCGCTAGACACATCCTCCTCCTCGCTGGAAGCAGCCTCAAGGTTGGTATGACAACTGATGAAATTGACTTCATCGTGCACCAGGAGACGATCAGACACAATGCCTATCCGTCTCCACTGTACTACGGTGGATTTCCCAAGTCTGTGTGTACATCTGTAAACAACGTGGTGTGTCATGGCATTCCAGACAGTCGGCCACTTCAAGATGGAGATATCATTAACATAGATGTTactGTTTACCTGGAAGGTTACCACGGCGACACCTCAGAGACATTTCTGATTGGTTCCGTGGACAAGCAAGGTAGGAAGTTAGTGGACGTGGCGCGACAGTGTAGAGACAAGGCCATTGCTGCGTGCGGACCGGGAAGCCCGCTGTGTGTCATCGGCAATACAGTCAGTGAAATTGCCCATTCGAATGGTTTCGCCGTGTGTCCATATTTCATCGGCCATGGCATTGGATCTTACTTCCATGGTCACCCCGAGATCTGGCATCATGcCAACGATAATGACTTGCTGATGGAAGAGGGCATGGCCTTCACAATAGagcCCATTCTGATGGAGGGAACCTCTGAATTCAGGATCCTGAGAGACAAGTGGACGGCCGTCTCAATGGATGACAAAAGGTGTGGACAGTCTGCACCACTGCTTGGTCAGCGCTTCAGCTGGAGTCCCATGTTTAAGGTGGATTGAAGGGAGAGGTAGTGT

Function

symbol description
metap1d Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrion. Orthologous to human METAP1D (methionyl aminopeptidase type 1D, mitochondrial).

NR:

description
methionine aminopeptidase 1D, mitochondrial isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
TU443794 False 852 lncRNA 0.34 1 12125344 12126195
XM_026931996.2 True 2408 mRNA 0.44 10 12109571 12125558
XM_034300417.1 False 1067 mRNA 0.53 10 12109571 12124014

Neighbor

gene id symbol gene type direction distance location
bora bora,LOC107556689 coding upstream 17317 12084060 ~ 12092254 (+)
gpr183b LOC108259007 coding upstream 132698 11972905 ~ 11976873 (+)
tmem41ab tmem41a,tmem41ab,LOC107588818,LOC107556698,LOC107732701,LOC107704344 coding upstream 223233 11877160 ~ 11886338 (+)
c26h3orf70 c26h3orf70,cunh3orf70 coding upstream 354455 11729545 ~ 11755116 (+)
pcca pcca,LOC107707835,LOC106594657 coding upstream 442938 11620634 ~ 11666633 (+)
itga6b LOC108258655 coding downstream 36809 12163004 ~ 12191808 (+)
eef1a1b eef1a1b,LOC108258313,LOC108441988,LOC107704332,LOC107602754,LOC107708683,LOC107693767,LOC108263602 coding downstream 99274 12225469 ~ 12230678 (+)
LOC117596105 LOC108258304,LOC108258298 coding downstream 306741 12432936 ~ 12437858 (+)
LOC113537720 NA coding downstream 311719 12437914 ~ 12441682 (+)
nt5c2b nt5c2b,LOC108258961,LOC108435980,LOC107602759,LOC107704322,LOC107738462,LOC105891044,LOC107568788 coding downstream 348104 12474299 ~ 12501528 (+)
G374585 NA non-coding upstream 196669 11896908 ~ 11912902 (+)
LOC117596172 NA non-coding upstream 392129 11709224 ~ 11717442 (+)
LOC117596158 NA non-coding upstream 418809 11689509 ~ 11690762 (+)
G374389 NA non-coding upstream 441945 11667199 ~ 11667626 (+)
G374377 NA non-coding upstream 509007 11600357 ~ 11600564 (+)
LOC113537502 NA non-coding downstream 10487 12136682 ~ 12141742 (+)
G374744 NA non-coding downstream 18238 12144433 ~ 12144654 (+)
G374746 NA non-coding downstream 23728 12149923 ~ 12150190 (+)
LOC113537659 NA non-coding downstream 278445 12404640 ~ 12406060 (+)
G374971 NA non-coding downstream 376289 12502484 ~ 12504159 (+)
LOC113537724 sept3 other upstream 1041569 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 1099951 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1850040 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 2233018 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 3639357 8465708 ~ 8470214 (+)
gpalpp1 gpalpp1 other downstream 1890328 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 1897055 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2232547 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 2953492 15079687 ~ 15099905 (+)
smdt1b NA other downstream 2988272 15114467 ~ 15116878 (+)

Expression


Co-expression Network