LOC113537724 (sept3)


Basic Information

Item Value
gene id LOC113537724
gene name sept3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11062016 ~ 11068002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442930
aaaaaagggtcTATTTTGAGAGGTAGTTTAGATGCAGAGTGGGTGTAACCCAGCATGCATTATTATGCACCTTGCAACTCACTAATAATGACTGGTCGTGCCTAACAACTAGATCCCATAAGAGCATCACTCTATTTCAGCTACTGCAGAgagtgaaggagggagagaaagtgggtcagaaagacaaaaaaaatcccttatATAAGACTATCACTCACCCACCCTTTCCTCGTCATTACcacagctgttactatagtaacacaCCCCCCCATGTGAAAAGAGGATGGCACAGCCCTGAtttggactgagagagagagagagagagcgtggtGATCAGACCCTCAAGTACATCATCAAATCGCTGTATCTTTCCATTCACCTTCACAGCCTTCCACGGATTTTAATAGTCATACTGCAGCACAGGTGTTCTCATCGTACAGCCAGTGTGAATTCACACAACCAGAAGCAATACAAGAGCATATTAATCCAGGATGTTTGTGGACTGGTTCGTCCCGGTCTATCTGCTTGTTTCTGTGCTGGTCCTGGCTGGGTTTGGAGCCTGTCTCTACTTCCTGGAGCCTGGGCTTCAAGATGCTCACAAGTGGAGTAACAAGTCCATCAAGCACCAGCCTCTGGTGCCCACACTGAAAACCCACCGAGATGATGACAGCAGCGCACTCATATGACAAGATGTGTGGAGGAGGGACTCAAGCAGTGATTGGATTCAGATCAGTGATCAGCAGACGCTTAAGAAGACGAGTTCACCAAATTTTCCACAGATATTCTTTCGCAATACGAGTCCTCTGAATGGTTATAAAGAGGTTGACAATGAATATGCATTATAGAGATATTTAGATCTGGTTTGGTTGGTTTCTTTGGGTACACATTCAGAAAAAATGGtattaaactgtacctttcctcaTCACTGGGGTGGTACACTAAAGGGTAcacctttagtgtgtatgttTCACCTGGAAAGGTGAATATAGTACCTTTAAAGAGATGAGTGGTTCTTAAGGtacaattatgtaccttaaattttttttaaaagtactcTACACTCATATTACCATGTAGAAGATACACACAAAAGATGTACCTTTGAACTGACTCCGTGACAAGGAGAGGTAgagtttattaattatttttttctgagagtgtatgcaGATAAACAACTATTATGttagctttttaaaattaaaatgttgaacagtataaatataataccaATTAGAACATGTGGGAAAATGGTCAAATGCTATATAGACAGATTACATATTTGGAACTCTGGGGGTTTTTCTacaggatatacagtatatgagtaGATATATTTTGAGAATTTATGGTTTATGGTAGTTTTTGCTTGTCCTTTAATCATGCAAGCTTTGGACTGTTCTGGTAGCTTGAGTCTGCCAttgtttaaaacaatttaatataCATCTAATCTTTGAGTGACTTTTTTCCACATCTGTACTTTATATCTGATTTCTATTCCCTTATACTTCTATGGAAATTTTTGTTCTATACTAATTGTTGTCTCTTGTGCAACATGATGTATTAGTCAAATTATTACAGGCATATAGCAGGATGCATATCTGTGAACAAAGAAATCTGATCAGACAAATCAGTGTTTTCCATGTTATATCTTACTCCCTAGACAGAATTTTAGAACcatgtttgtgttattttagaTAAGAAAGCCAACCTTTACAATAAGTGACAGTAGTAGTTGTCTACTCCATACGAGACAATGCAAGTTGTTGTTCAATAAATAACCTC
>XM_034300343.1
ACAGCCCTGAtttggactgagagagagagagagagagcgtggtGATCAGACCCTCAAGTACATCATCAAATCGCTGTATCTTTCCATTCACCTTCACAGCCTTCCACGGATTTTAATAGTCATACTGCAGCACAGGTGTTCTCATCGTACAGCCAGTGTGAATTCACACAACCAGAAGCAATACAAGAGCATATTAATCCAGGATGTTTGTGGACTGGTTCGTCCCGGTCTATCTGCTTGTTTCTGTGCTGGTCCTGGCTGGGTTTGGAGCCTGTCTCTACTTCCTGGAGCCTGGGCTTCAAGATGCTCACAAGTGGAGTAACAAGTCCATCAAGCACCAGCCTCTGGTGCCCACACTGAAAACCCACCGAGATGATGACAGCAGCGCACTCATATGACAAGATGTGTGGAGGAGGGACTCAAGCAGTGATTGGATTCAGATCAGTGATCAGCAGACGCTTAAGAAGACGAGTTCACCAAATTTTCCACAGATATTCTTTCGCAATACGAGTCCTCTGAATGGTTATAAAGAGGTTGACAATGAATATGCATTATAGAGATATTTAGATCTGGTTTGGTTGGTTTCTTTGGGTACACATTCAGAAAAAATGGtattaaactgtacctttcctcaTCACTGGGGTGGTACACTAAAGGGTAcacctttagtgtgtatgttTCACCTGGAAAGGTGAATATAGTACCTTTAAAGAGATGAGTGGTTCTTAAGGtacaattatgtaccttaaattttttttaaaagtactcTACACTCATATTACCATGTAGAAGATACACACAAAAGATGTACCTTTGAACTGACTCCGTGACAAGGAGAGGTAgagtttattaattatttttttctgagagtgtatgcaGATAAACAACTATTATGttagctttttaaaattaaaatgttgaacagtataaatataataccaATTAGAACATGTGGGAAAATGGTCAAATGCTATATAGACAGATTACATATTTGGAACTCTGGGGGTTTTTCTacaggatatacagtatatgagtaGATATATTTTGAGAATTTATGGTTTATGGTAGTTTTTGCTTGTCCTTTAATCATGCAAGCTTTGGACTGTTCTGGTAGCTTGAGTCTGCCAttgtttaaaacaatttaatataCATCTAATCTTTGAGTGACTTTTTTCCACATCTGTACTTTATATCTGATTTCTATTCCCTTATACTTCTATGGAAATTTTTGTTCTATACTAATTGTTGTCTCTTGTGCAACATGATGTATTAGTCAAATTATTACAGGCATATAGCAGGATGCATATCTGTGAACAAAGAAATCTGATCAGACAAATCAGTGTTTTCCATGTTATATCTTACTCCCTAGACAGAATTTTAGAACcatgtttgtgttattttagaTAAGAAAGCCAACCTTTACAATAAGTGACAGTAGTAGTTGTCTACTCCATACGAGACAATGCAAGTTGTTGTTCAATAAATAACCTCAATAAATATGAGAAAATGTATTGGAGAAAAGTcgtaactgaatacaaatatattactTGGAATGAACAGGTAATGTCCTCTaaaaagatacaaatacagTTATGGTGGTGAATTATTCTTTACAGAAAGTTTCCCAGgccatctggttgagactagaggtgtgcattgagACTGGGATCCCACGGGACACAGCAAAACGTCATGCTAGCAGCCAGCAGAGAGATGCAGACTAACAGGCCTATCCACATCTCCTCATTCAGTGACAGTGGGGGCCCCCTGGATCTTTCAACCCACACTTTTCCATGCAGCAGCAAACCAGCATCAGGTACTGATagtctggaatcttccagacaaTCCCTTCCTTCAGCCTTCAATCAGCCTTCAGTCCAAAGCACTGTCCAATCAGACAATGAGCAGTCTAAATCGACAATAACATCATGCAGTGAGAGAAGGGCTAAATCAATCCCCATCTCAAAAACAAGAATCcagcaaaagcaaaaacaggAACAGTTACCTAGGTACCAGTACCAAGGCATGCTTCGTAAAGATGTCAGTTCGGAAGACAAATCCATCAGAGATATCGTGACTAAGAAGGAAAGCATAAGTCGCCAAAACCTGAAACATATAGGAAGAGGACCACAAAGCCTTGCGTCCTATAAAAGAAGGCATCTAACCCAGAACCCTGTTTTAATTCAAGCCCGTCTAGGGTtaaacaaaacaggaaagaCTGAAAACCCTGGATCAAGACTTTTATTTGACAGGACAAAGTCAAAGTTAAACCAAGCTTTGTTAAAATTGCAGAAGGATAAAGATGTGACTGGTGGAGAAATGTCTCAATCCAAGCCACAAATGGCAAAGTCTGATGCAAGCAATCAACCGTCAGGTCTTACCAACAGGTTTCAGAGCAATCCAAGCCCTGACAGTCAACTCAAACCATCCTCTGAATTTCCTAAGGACTATGAAGTGTTTATATCTTTAAAACAATCCAAAATAGTGGATTCCTCCTCTATCAAATCCTCTTCCTCTATCACATCCTCTTCCAAAGCTCTAAACTGTGATCCAGAGATTCACACCAGTCCAATCACTGGGGtttcacagaaaataaaaagtgaaggCCCTGTAAATGTTCATGAGAACAGCAACTCTTCTTTGCTTGATTTAAATACCAGTGTTACTGAAACCCAAAGGTCCACTCATCACAGTAAGCCCCAATTCACAGCTTCAGAAACAGACACCTGCATTAGCACACTAAGTCAAACCAAGCAGACGGACTGCTTCCAATTCCCTTTGAAGAGTCACGGATCATCTGCTGAATCCAGTCATTTGGCCAGAATCTGTAGACCTGAATCAGAAACAACCACatcaaattatatttacacacCCAGACAACTCAACCAGACTGACCAATTTCCTTTGAAGAGCAGAACCTGCAGACGTGTGATCAAAGGAGCAGGCAGTTTTTCTGACAGAAAGTCTACATATCTGATATCTACTCAGGCACGAAAGAAGGACTCATCCCTTCATGAAACAGCGAGAAGAGGGTCTCAGAAAAAAGATGTTTCCAAGCCATCAAAAAAGAGCTATGTTGGTTTAGATACAGATTCCTCCAAATCTAATTCAAGCCAAACAAGCTCTCTAGAGgaagacacacacctgagaaaacacaaatgcTTAGAGGTACAGATAAAGTGTGGTATATCTTGTAGCACACAATCTACTAGTACACACACAACCAGGGATACAAGGGATGATGCAGTGATTCAGATGGCCTCCCATGACCTGCCCCACACCGGCTCCCCACGAGACCTGTACAATCATCCTGACCAGGAAACACATACAGTCATTCCAGAACTTTCCATGGGTGACTGGATGCCCCAATCTGGAGCTGACAAAGCATGTGAACAGTCATTAACCAGAAGAAGACAGTTTGACAGTTGA

Function

symbol description
sept3 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Predicted to be located in presynapse. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and neuron projection. Is expressed in nervous system and retina. Orthologous to human SEPTIN3 (septin 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442930 False 1779 lncRNA 0.39 2 11062016 11064035
XM_034300343.1 True 3429 mRNA 0.41 5 11062304 11068002

Neighbor

gene id symbol gene type direction distance location
serhl serhl2 coding upstream 2518 11053094 ~ 11059498 (+)
c26h19orf67 NA coding upstream 60338 10996738 ~ 11001678 (+)
pnpla6 LOC108258612 coding upstream 134165 10894036 ~ 10927851 (+)
LOC117596166 NA coding upstream 175217 10883180 ~ 10886799 (+)
LOC117596104 NA coding upstream 178829 10879995 ~ 10883187 (+)
sept3 sept3 coding downstream 7 11068009 ~ 11079689 (+)
atf7ip atf7ip coding downstream 16540 11084542 ~ 11129515 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding downstream 71387 11139389 ~ 11241579 (+)
si:ch211-243a20.4 NA coding downstream 192726 11260728 ~ 11268151 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding downstream 201533 11269535 ~ 11274442 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 96861 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 110536 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 128213 10929744 ~ 10933803 (+)
G373871 NA non-coding upstream 250999 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 254572 10806240 ~ 10807444 (+)
G373975 NA non-coding downstream 2120 11070122 ~ 11091105 (+)
G373982 NA non-coding downstream 67551 11135553 ~ 11135936 (+)
G373997 NA non-coding downstream 211814 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 340253 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 404697 11472699 ~ 11472973 (+)
G373955 LOC108258951 other upstream 52396 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 802485 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1185463 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2591802 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2908161 8149960 ~ 8153855 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1041569 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2948521 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2955248 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3290740 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 4011685 15079687 ~ 15099905 (+)

Expression


Co-expression Network