G373975


Basic Information

Item Value
gene id G373975
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11070122 ~ 11091105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442932
ctcaaattaaaactaaaagtctgcaataatattttgtaatattattttgtaataataatctgtCAGATTAGACAGattattactaaatattattaaaaccatctgcctaatattgCGTAGGTCGCTCTTGTGCCTCCAAAATAGCTCTGatccatcgaggcatggactcaacaagacctctgaagGTACTAGCAGGAGGTACTGCAGAGTGTTTTTATTGACCACGCTCTGGCAGTGGTATTTGAGACAGCCAAACCTGTCTTCTTGTCAACAGACCTAGTGATTTACACTGCTATGGATCTCATAGCATGGAGCACAGCCTGTAGGATTTCTGGGCTCATTGTAGGCATTATCTCACTATGGCTCAGGACCCACTGGTCTACTGTGTTAGAATTACAGCTTACACTGAGCAGAGTATCATAAGCTTTGCAGACCAGCATGTCAGTTCTTTTATACTTTGGTTTTATGCAGCACAGATCTTTGTGCAAAGGTTCATCAGCCTGTACCACTAGTGAGGCCACCGGTCTCTCTATGAGAGGCACTGAGCTCAGCCCAAGGGCTTCTGCATCTGCCACTGCATCCAGTGTGCATTCCCTGTTATTAGGTCACAACTTCAGTGTGCTCTTAAACATGCACAGAGCTCTTTAATGAAACTGGTCCATCATGGAATACCCCATTCACTTGTTTGGGCAAAATGGATAAGGCATCTGATCAGCTATGTCAGGTGGCGGATTCTCAGCCTTAATTCCAACCTGCATCTcattcactgctgctgctgagccACAACCAACTCCCAGAGTGTGTGCTATCAGGGCTTTCAGCCCAAGTGTGCCTCAAGTTTAGCGAATTAAACTGAACCACTGGAAATAGAGTCTGTTGCTGTATGTGAGGAAGCTGTACTGTACTTCGTCTGAGCCCACTCTTCTTTAGGCTGCTGCGTTACCACTAACAGCTCTTGCATTTGGTCAGGGTCTGTTCCCAGCTCCACTGCAATTCACTCTTACATTTCCATGGGGGCTGAGCAGCCAAGCCTTCTACCCATTTCTGTTTCTGCTGCAATACCACAGGAAAGCAGCTTATTTTTGTATTGCTAGAAGGCTCTGTAGCAGTTTCTGCTGCTTGCTTCACTCCCTGTAGCAGTATGCAGCATCAAAGGAAGGTAATGGGTAGTCAGCAGCATTTCCATAGCATGAGAGGTGTTCCTCACATGTCACCATCAGCATTATGCTGCAGTTAGAGGAAGAATGTGAAGGTGCTTGTCAAGCTGGTCCCAAATAATTTGAGCAATTATCATATCCATCATCCAACTCCATTGGGCCTGGCATCCTGCCCTGAAACGAAGTTGGAAAAGTCCACGAAGTATGGTAAATTATCAAATCCTTGGCAAAACCAATAAAGAGTGATGTAGCATGGACCTTTTGTACTATTTCCATTTGATGGTCACGAGGAGATGACTTTGCTACTTGGATGGGAAACAGGAACATGGGGATAGTCCACTAGTTCAGAAGGAGAACACCTGATGGTTCTGAATGAATGATTTGTATACTTTTTTGGTGATAGGAAACATTTCATTAACAAGGCATTTCACCAGAATACACTAAAAGTGATTTTGGTcccaacattttttaaattgcaagatGTTATTCATGAATGAGACACAAAGGCAAATTGGCATTAACAGAAAGTGATTGAAGTCCTgatttttttgctaaaataCTGAGTGCATGAATACCCATATAATGCATGTTGATAAGTGATATGGTAGAGTGGCCCTGTATGATTAAGCCTTTGGATTTTTGCATGATTATgccattcctttttttaaatagttaaaacaGCACcaattaatgaaataaactcTAGTACAGTTTGGTTAGTGAAAATTACAATGTTAATATCAAGTAGTGATTGCGTGGTTGCGTGCCACATTGCCCCACAACCTCACAGTGCTCATGGTGCTCTGATCTGGTTATCCTGCCTTCTTTTAGGTTTTCTGCTTGTGTATTTAAATAGCACGTGGACTGGGCGTTGTGCCTTGTTCTCtcattgtttttgctgtttcttGCTCTTTCAAAGTAACATACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442932 True 2086 lncRNA 0.42 2 11070122 11091105

Neighbor

gene id symbol gene type direction distance location
serhl serhl2 coding upstream 10624 11053094 ~ 11059498 (+)
c26h19orf67 NA coding upstream 68444 10996738 ~ 11001678 (+)
pnpla6 LOC108258612 coding upstream 142271 10894036 ~ 10927851 (+)
LOC117596166 NA coding upstream 183323 10883180 ~ 10886799 (+)
LOC117596104 NA coding upstream 186935 10879995 ~ 10883187 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding downstream 48284 11139389 ~ 11241579 (+)
si:ch211-243a20.4 NA coding downstream 169623 11260728 ~ 11268151 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding downstream 178430 11269535 ~ 11274442 (+)
LOC113537603 LOC108258484 coding downstream 193068 11284173 ~ 11294762 (+)
ddx39aa ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747 coding downstream 263030 11354135 ~ 11360446 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 104967 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 118642 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 136319 10929744 ~ 10933803 (+)
G373871 NA non-coding upstream 259105 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 262678 10806240 ~ 10807444 (+)
G373982 NA non-coding downstream 44448 11135553 ~ 11135936 (+)
G373997 NA non-coding downstream 188711 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 317150 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 381594 11472699 ~ 11472973 (+)
G374296 NA non-coding downstream 404000 11495105 ~ 11495467 (+)
LOC113537724 sept3 other upstream 2120 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 60502 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 810591 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1193569 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2599908 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1018466 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2925418 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2932145 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3267637 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3988582 15079687 ~ 15099905 (+)

Expression


Co-expression Network