rfx1b (LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697)


Basic Information

Item Value
gene id rfx1b
gene name LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15079687 ~ 15099905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445701
GGTAGTCCTGGCGACAAGAACCAAGCAACGggaatcaacaacaacaacaataacaacaacaacaatctaAACTattaaggaattaaaaaaaaaaacctcagcaaACAACCAGCACGGACTACAAGTAACGCAGGGTTTCGGCTGTGCTCGTAATGGCGACTCCAGGCTACACAGAGGAGCTCCAGCCCTCCCAGCCTCAAGGCGGCAGCGTGACCACGCCGAAAAGCGGCCAGCAAAAAGCCAGTCCCACCGTCACGCCCACGTTCCTCCCAGACATGCAGAGCTCGTCCAGCTCCTCCCCTTCACAGGCAGGCCTTTCCTCTAGAATAACACAGACCACACCTCCGGCGATCCTCAAGAAGGCCGTtctggccacgcccactcagGTTACAGCGGCGGCGGCGCAGTACGCCGTGTCCGAGATTCAGAGCTCCGCCTCCGGGTCCAGCAACGGGCAAAACACACCACAGTACATAGTGGTGACCGTTTCAGAAGGCTCTATCCATTCGAACGATTCGGTGTCGGATTCCAGTCCACCTCCCACCGTCCAGACGGGTGTGCCGACACACGTGGTGCAGACTGCACAGAGGTCAGTAGTGCAGACCACAGCCAAGAGCGGCCAGCACGGAGTCGGCAACCTGCACATTACTCCTGAGatctcTCAAGTAGGGCATGTCTACTCCAGCCAGGTTCAGTATGGGGATGGAGACAGCAACTACAACAACACATCCATTCGTTCCAGCACGTACCCCTTCACAGAGTCCTCCCTCTACGGCCAGGCCACGCCCTCTGGCCCGTACTATGATGATCCGCCCACATCCGGGTCACAAGTCTCCACCCCTGTGACTTCGCAGCCGGTTTCCGTGACGACAGGATTCTCAGGGGGTGGTACTGGGGTGACGGTGGTATCAGG
>XM_034300416.1
TGGACGGGTGGGTAGCAACAGTTGCCCCGGTGAGGACGAGGCGCCATAGTCACGGTAGTCCTGGCGACAAGAACCAAGCAACGggaatcaacaacaacaacaataacaacaacaacaatctaAACTattaaggaattaaaaaaaaaaacctcagcaaACAACCAGCACGGACTACAAGTAACGCAGGGTTTCGGCTGTGCTCGTAATGGCGACTCCAGGCTACACAGAGGAGCTCCAGCCCTCCCAGCCTCAAGGCGGCAGCGTGACCACGCCGAAAAGCGGCCAGCAAAAAGCCAGTCCCACCGTCACGCCCACGTTCCTCCCAGACATGCAGAGCTCGTCCAGCTCCTCCCCTTCACAGGCAGGCCTTTCCTCTAGAATAACACAGACCACACCTCCGGCGATCCTCAAGAAGGCCGTtctggccacgcccactcagGTTACAGCGGCGGCGGCGCAGTACGCCGTGTCCGAGATTCAGAGCTCCGCCTCCGGGTCCAGCAACGGGCAAAACACACCACAGTACATAGTGGTGACCGTTTCAGAAGGCTCTATCCATTCGAACGATTCGGTGTCGGATTCCAGTCCACCTCCCACCGTCCAGACGGGTGTGCCGACACACGTGGTGCAGACTGCACAGCAGAGGTCAGTAGTGCAGACCACAGCCAAGAGCGGCCAGCACGGAGTCGGCAACCTGCACATTACTCCTGAGatctcTCAAGTAGGGCATGTCTACTCCAGCCAGGTTCAGTATGGGGATGGAGACAGCAACTACAACAACACATCCATTCGTTCCAGCACGTACCCCTTCACAGAGTCCTCCCTCTACGGCCAGGCCACGCCCTCTGGCCCGTACTATGATGATCCGCCCACATCCGGGTCACAAGTCTCCACCCCTGTGACTTCGCAGCCGGTTTCCGTGACGACAGGATTCTCAGGGGGTGGTACTGGGGTGACGGTGGTATCAGGAGCATCTTCTTCAGGTGGGGGGGGAGGCGGGGCTGGAACCGGAGGGGCGGGCGGTTATGTGGTTCCCGGCACCTACGTGATGGGAAGCGGAGGCCAGAATTACACGCACAACATACGCGCCTCACCTGCTACTgtgcagTGGCTATTGGATAACTACGAGAAGGCAGAGGGTGTGAGTCTGCCGCGCTGCACGCTCTACTATCACTACCTGCTTCACTGTCAGGAGGCCAAGCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAACTCATTCGCTCCATGTTCGTTGGCCTACGCACTCGCCGACTCggcaccagagGGAACTCGAAGTACCACTACTACGGCCTTCGGATCAAGAGCAGCTCCCCCCTGCACCGGCTCGTGGAGGACCAGCAACACCTGGCCATGAGACAACAGCCCTTCTCGCATAagcacagGATAAGACCGGTGCAGAAAGTTGAGGGGATGACCAATGGGATGGCTGTGGGGGCGGGGCAAGGAGCAGGCCAGGGGGTGGGGCTGTTCGATATCAGCTCCCAAATCCAGCAGTATCAGCAGTTTttggATGCGTCTCGCTCTCTGCCTGAGTTTCCAGAGATTGATCTCCAGGGAAAGGCCCTGCCAGAAGGGATTCTTCTGGAACATATCCGAGCCTTCCAGCAGCTCTACCGGGAGCACTGTGAGgcgaTAGTGGATGTGATGGTGAACCTGCAGTTTCCTCTGGTTGAGACTCTGTGGAAAAGCTTCTGGAGATTCAGCGAGGGGCAGACCAACGAAGCACTCGACCTTCACAGTGAATCAGAGAAGCGACTGCCGAAAGCATGTCTGGTTCTGCTGTGCCAGTACGAGCCGGTTCTGCAGTGGAGCCGCAACTGCGACAACACACTCTACCAGACGCTAGTGGAGATCCTCATCCCCGATGTGCTCACACCTATACCCAGTGCCTTAACACAAGCCATCCGCAACTGTGCCAAGAGTTTAGAGAACTGGCTCACCAGTGCCATGATGAACATTCCAGAGGAGATGGTCCGCAttaaggtggtgtgtgCAGGGGCGTTTGCGCAGACGTTGCGCAGATACACTTCTCTGAATCACCTGGCTCAGGCGGCCAGAGCCGTACTGCAGAACTCGGCCCAGATCACACAGATGCTCAACGACCTCAACCGCGTGGACTTCAACAAcgtgcaggagcAAGCGTcgtgggtgtgtgcgtgtgaagaGCGCACGGTGCAGCGGATCGAGCAGGACTTTAAGATGACGCTGCAGCAGCAGAAGTCTCTGGAGCAGTGGGCTGCGTGGCTGGACAGCGTCGTCACACACGTCCTCAAACCCTATACGTCCAGCCCGTCCTTCACCAAAGCAGCCAAACTCTTCCTGCTCAAGTGGAGCTTCTAcagctcgATGGTGATCAGGGATCTAACTCTGCGCAGCGCGGCCAGTTTCGGCTCGTTCCATCTCATCCGGCTGCTATATGATGAGTACATGTATTACCTGGTGGAGCACAGAGTCGCTCAGGCCAAAGGAGAAACACCCATCGCTGTTATGGGAGAatTTGCAAACCTAGGCCGGAACGACAGCGCAGCAGACGCAGACAAAGaagaggaggaagaggaagaggacgaGAGCGACGAAGACCAGATGCCTATTCCGGTCAGCTCGACTGCTATGGGGGAGGAGTCTCTGGAACCGCCCGCCAAATTAGCCAGGACGGATCTGTTCAACAGCACGcacaactaacacacacacacacacacacacacacacacacacacactattcaacACCACTTACAGCTCATACACTCACATAAACCTGGTCAGAGAGTTATTACATATGATCATTACAcatcactgatacacacacacacacacacacatatatacagattTAGCTTTGTGTTCTATCCTCTCTCTTAGTGCCATGCAGTCGTTTGCCTTATTCATTATTGCCTTTTGAGAGAACTGTTCTATCTGCCATAGTGTATCAATGTTTAATGCCTTAAATTAATTTGAGTGATATGCCTTATATACTTATACATTACATCCCGTTCGTGTGAGAGTATTTACATGCATATGCATACACACTGCCAGTTTAAACGTTTTTAGAAAATCATGGAGTTTGCGCTTTTATTACAGTTTCATCACTGTCACAATCCGAAAACCTACACCATGACAACTCAATACAGACAAACTTACAGATTATGATTAATGACACCCCAGTGCTGTCGAGCTCTCGATTCTGACtggatcacaggtttatattaatgcgctcatcgtttctatagtaacagctcactcacagagACTTGTCTGGAGGACGCTTCATGTAATCTAAGCCTAGAAAtgaatggattcaaaaaatgtGCTATTTAACATAGAATCGTtaatatggtgacgttttctgtaaggagatgtttatttaacctttaagaaaggagtctccagtgtcagtgttttgtaaaaaaaagtaagttttctgacacgggaaagtcttc

Function

NR:

description
PREDICTED: MHC class II regulatory factor RFX1-like

GO: NA

KEGG:

id description
K09173 RFX1_2_3; regulatory factor X 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
TU445701 False 913 TUCP 0.57 6 15079740 15091481
XM_034300416.1 True 3461 mRNA 0.53 19 15079687 15099905

Neighbor

gene id symbol gene type direction distance location
LOC113537365 ugp2a,LOC108258649,LOC108438596,LOC107757023 coding upstream 22466 15044012 ~ 15057221 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding upstream 36316 15035260 ~ 15043371 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding upstream 65227 15005828 ~ 15014460 (+)
LOC113537589 NA coding upstream 127509 14945645 ~ 14952178 (+)
LOC117596107 c26h1orf100 coding upstream 139086 14938005 ~ 14940601 (+)
si:ch211-133l11.10 NA coding downstream 58542 15158447 ~ 15162364 (+)
kif16ba kif16b,LOC107757030 coding downstream 110732 15210637 ~ 15237040 (+)
esf1 esf1,LOC107579043 coding downstream 175026 15274931 ~ 15284732 (+)
trnaq-cug_18 NA coding downstream 249349 15349254 ~ 15349325 (+)
psen2 psen2,LOC108258586 coding downstream 339983 15439888 ~ 15453548 (+)
G376287 NA non-coding upstream 76771 15002707 ~ 15002916 (+)
G376273 NA non-coding upstream 101709 14977773 ~ 14977978 (+)
G376242 NA non-coding upstream 163244 14910725 ~ 14916443 (+)
G376245 NA non-coding upstream 206186 14873223 ~ 14873501 (+)
G376202 NA non-coding upstream 212795 14805718 ~ 14866892 (+)
LOC113537537 NA non-coding downstream 1134 15101039 ~ 15103414 (+)
G376393 NA non-coding downstream 17565 15117470 ~ 15117890 (+)
G376409 NA non-coding downstream 48554 15148459 ~ 15148666 (+)
G376412 NA non-coding downstream 55349 15155254 ~ 15155481 (+)
G376405 LOC100194557 non-coding downstream 84604 15184509 ~ 15185982 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 719083 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 1037073 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 1058556 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2953492 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 4011685 11062016 ~ 11068002 (+)
smdt1b NA other downstream 14562 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 265894 15365799 ~ 15400404 (+)
G376467 NA other downstream 321494 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 391141 15491046 ~ 15492575 (+)
LOC113537700 NA other downstream 631757 15731662 ~ 15756178 (+)

Expression


Co-expression Network