G376273


Basic Information

Item Value
gene id G376273
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14977773 ~ 14977978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445589
attaattcataatttaaaaacacgACACAgcatagtggtgcagtgggtagtgttgccacaTCATAGCTCCAGGCAGAGTTGCCATGGGTGTCGGTTTTTACCCCAAACTGGGCTAGATTTGGAACAGGTTCTCGGGTGGAAAAAGCAAGTCCATGGGTGATTTTTTGGGGCTTGTTTAAAAATAGTCTGCGTCCACCAAGATCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU445589 True 206 lncRNA 0.45 1 14977773 14977978

Neighbor

gene id symbol gene type direction distance location
LOC113537589 NA coding upstream 25595 14945645 ~ 14952178 (+)
LOC117596107 c26h1orf100 coding upstream 37172 14938005 ~ 14940601 (+)
pus10 pus10 coding upstream 67791 14898080 ~ 14909982 (+)
LOC113537613 NA coding upstream 190874 14764780 ~ 14786899 (+)
LOC113537648 NA coding upstream 247432 14725967 ~ 14730341 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding downstream 27850 15005828 ~ 15014460 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding downstream 57282 15035260 ~ 15043371 (+)
LOC113537365 ugp2a,LOC108258649,LOC108438596,LOC107757023 coding downstream 66034 15044012 ~ 15057221 (+)
si:ch211-133l11.10 NA coding downstream 180469 15158447 ~ 15162364 (+)
kif16ba kif16b,LOC107757030 coding downstream 232659 15210637 ~ 15237040 (+)
G376242 NA non-coding upstream 61330 14910725 ~ 14916443 (+)
G376245 NA non-coding upstream 104272 14873223 ~ 14873501 (+)
G376202 NA non-coding upstream 110881 14805718 ~ 14866892 (+)
G376191 NA non-coding upstream 187302 14790046 ~ 14790471 (+)
G375961 LOC108258536 non-coding upstream 388636 14582251 ~ 14589137 (+)
G376287 NA non-coding downstream 24729 15002707 ~ 15002916 (+)
LOC113537537 NA non-coding downstream 123061 15101039 ~ 15103414 (+)
G376393 NA non-coding downstream 139492 15117470 ~ 15117890 (+)
G376409 NA non-coding downstream 170481 15148459 ~ 15148666 (+)
G376412 NA non-coding downstream 177276 15155254 ~ 15155481 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 617169 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 935159 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 956642 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2851578 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 3909771 11062016 ~ 11068002 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 101709 15079687 ~ 15099905 (+)
smdt1b NA other downstream 136489 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 387821 15365799 ~ 15400404 (+)
G376467 NA other downstream 443421 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 513068 15491046 ~ 15492575 (+)

Expression


Co-expression Network