G376191


Basic Information

Item Value
gene id G376191
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14790046 ~ 14790471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445495
GGAGGCTGCTGGTCTTGCTGAGctctgcgctctgattggtcagttccGGCTGCAGGGAGTGGTACTCGTTCAGCAGGTTGGTGACCAGGACGCTGATTAGATTAGCACAGCTCGGCCCGGACAAGACCTGTGGCTGCACCTTTACACACGTGCAGGGTTCCGAGTCAAATTTGGTTAAAGCCACACAACACTTCCTCTTTCACACTTGTTCATAACAGACATCATAGTCTATGATTATCGACATTCACACGCTCCCCCGtagttgattttattttacagtttatccacaaaacaacattttcttggtgaattttaaattaaaacctgTTACAACATGCAGCACCTGAGCCTCAGTCAGCACTGCCCTTCATTACCACGACCAGACGTTTGtgtcagtttatttaaaaagaaactcaCTAAGGTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU445495 True 426 lncRNA 0.46 1 14790046 14790471

Neighbor

gene id symbol gene type direction distance location
LOC113537613 NA coding upstream 3147 14764780 ~ 14786899 (+)
LOC113537648 NA coding upstream 59705 14725967 ~ 14730341 (+)
LOC113537710 NA coding upstream 70770 14716724 ~ 14719276 (+)
ltv1 ltv1,LOC107594288,LOC107100359 coding upstream 95237 14682384 ~ 14694809 (+)
capn9 capn9,LOC100136217,LOC106564727,LOC106587445 coding upstream 108660 14664662 ~ 14681386 (+)
pus10 pus10 coding downstream 107609 14898080 ~ 14909982 (+)
LOC117596107 c26h1orf100 coding downstream 147534 14938005 ~ 14940601 (+)
LOC113537589 NA coding downstream 155174 14945645 ~ 14952178 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding downstream 215357 15005828 ~ 15014460 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding downstream 244789 15035260 ~ 15043371 (+)
G375973 NA non-coding upstream 159813 14553837 ~ 14630233 (+)
G375961 LOC108258536 non-coding upstream 200909 14582251 ~ 14589137 (+)
G375976 actr2,LOC108423375,LOC104930021,LOC106577324 non-coding upstream 223388 14560671 ~ 14566658 (+)
G375970 NA non-coding upstream 267512 14518989 ~ 14522534 (+)
G375955 NA non-coding upstream 308527 14481221 ~ 14481519 (+)
G376202 NA non-coding downstream 15247 14805718 ~ 14866892 (+)
G376245 NA non-coding downstream 82752 14873223 ~ 14873501 (+)
G376242 NA non-coding downstream 120254 14910725 ~ 14916443 (+)
G376273 NA non-coding downstream 187302 14977773 ~ 14977978 (+)
G376287 NA non-coding downstream 212236 15002707 ~ 15002916 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 429442 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 747432 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 768915 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2663851 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 3722044 11062016 ~ 11068002 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 289216 15079687 ~ 15099905 (+)
smdt1b NA other downstream 323996 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 575328 15365799 ~ 15400404 (+)
G376467 NA other downstream 630928 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 700575 15491046 ~ 15492575 (+)

Expression


Co-expression Network