G375711 (tpt1,LOC107734570,LOC107598740)


Basic Information

Item Value
gene id G375711
gene name tpt1,LOC107734570,LOC107598740
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14023250 ~ 14042614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444906
CTGCAGTGTTCCTTCACGGCAATACCTGAAGAGTTAAATTCTGTGGAAGgcaagttttaaataaataaatcttaactCTCTACACAAGACACCTTTAGCCAGCAgcttgactttatttatttcacaaataGTTCCAAGAAATCCTATACAATCCCGTGATTTGAAGGAGATgggagggggaggagggggtGGGAATAATACCTGTACAACTGCCGTCTGAGCGCCGACATGCACACAGCAAAACCAATTCCCAGGCAGTCAAActtgatgaaattaaaaaaataaaccctaAAGTGAGCTGTATCATGTCTTCTTCCTCTGACAATGCAAAGCTCTCTGCAATTTGATCCAGCTCACTAAAATACTGTTCACCCCATGAGCTGGTGTGTGGAGGGGCTTTGAGTTCTTCTGGATGGACACTGATTATAGGAATCGAAGCGGTGGCcgtagaggaggaggaggaggaggtttaAAAGAGCTTCCGGTCCTGATCCTGATGGAGACGAGTGGAATGAGTGATCTGATCCAAAAGCTTTTACGGCCATCCGCTGATGAGAAGCAGTCTGGGACACGAGCAGGGTAGTTTACTgaagagagaacacacacacacgcagattAGACAAGATTCCGACCCAAACTTCACAAATTACCAAATTAACCACCACATTTACACCAATAGCTAAGTGTCATACATTTTGAAGAAGTCGTGCTACCTTACGAAACTCACAATACGCAAAACTGTCCCTCTTCATGAATATTCACTAATGCAACTTCACTAGAGTTCATTCAAGAACCCGACGTTCATGCTAGCAAGCGATAAGCCGTTTGTATGTCTCATGCGTGCATACACATCAAGAtcagaaacagcagcagctacacacacacagtgtaaaactgCTAGTCTGGTTTACATGCTTGGCTACGTGCTAGCTTCGCTGGCACATTAGCTACTACCTATGTATGTCCTTCCAAGCATTATATTTTTTCGTCATGTCTACACATTTAACGAGATAACATGAAGTATATGAACAGCCGCTTTGCTGCTATCTAGCGTGAATGTAGAAtaagtatttagtatttatagACAGTGAGAAAAATACATGCCATCTGAAAAGAGATAGAAGGAAATCCATTTTACAAGTGTccttattttaaacaaatctgaAGACTGAACTCTCTGAACTATGCTTCTTAAACTGCTGTTAAATGGACATGGATGAAGAAGGGTGAATGTTTGGAGGGAAAATGGAGGACAGACGTGTTCGTCCAACACCATACACTAACAGAAATGTTATGAccttatgtttaatttatgcgAGCGTGACACCCTTCCCTGTCATCTCAATGATGCAGGGtattaaacattaacacagtCAGACTAACATGGGCAGCCTGTTCTCCTCTCTTCAATCTGCTTCTGCCATTTCATAGACAGCTAGAAAGCGCGAGGAAGATTACTGTCGCATCCCAGTGCAAACCCAGAGGCCACTGATAACGGCAGCAGGTCTATCAGTAGATGCCAGAAATGAGGCACCGCCCATTTTTATTCAAGTCCCACCACCCCAACTCCCATTACTATCCAGAGCTATACAAGCCTAAACCCTGAAGATATGTTTAAGGCAAGATACTACAGAAAGAGATGTCAATTTTTCAGATTTGTATCCATAATttatgatggattttttttgcgGATTCTAGAAAAATAGCATAACGGTACAAGTTTTAAACCAGTAATATGATAACCTAAACTATTTTACTGATTGAATGCTAAACGTTCCAACAAACTGTTCagtaaaaatcttttttctttatctgaAGTGTTTTGATTCCAACATGAAGACTAGATTTTAGACTACATTTTGGCAATATAAAATTGACACATTTAATTAGATGAAACCTCGTTTGTATAAACCCAAAGAATTTGCCATGTTAAGTATTCCTACGCAAGCATGAACGCTGACGAGCTGTCTTTAGCAGTCACACCCAGACCGTAGACACTTACGCATTTCTCAATCTCAAGACCGTCTTTGAAGAAGAGCATGAACGGTGTCACTCCGTCCTCACGGAAGTCGAGCAGACCAATTGAGCCATCGGGGTTCATGGATTCACCTGTGAAAAACTGCACCAAAGATGATTTTGGTCAGAGGGAGAACTACAAAAGCAGAGCTTTTACTTTCAGGGTTCAGTCGTACTCAGGATATGATTTAGTTTCATTGGTCGTGACCTCCAAAGGTGTCCTAAGATCGTCATCACCGTACGTTTATCGAGATCATTCGAGGCCCTCTcttgaggaacacacacacatatgcagatAGTTACCTGGAAGTTCTTGATGTTgcctaggattttcttgacctCAGCTGGAGCATTAGCCATGAAGGGCTCTACCCGTTCAGGAGACGTTTCCTGCAGTTTGGCCTTCACCCTGTCGCAGAGAACAAGCACGTATTCAGCGTACAGTGAGGCACACGGTTTCACCAACAAGGGATTAAATTTAGTACCATCAAAAGAAGTCATGTTGTCCCCAATTCAATCTCCTAAGTCACAGACAGAACATGAAGAAAGCGCAGGGACGGTTTATTTAGCATCTATAATTTAAAACCCACTCACTCACAAGAGAAGTAACCGGGCTGTCAACAGATGCCAAaggggggaggaaaaaaaaaaataataataataataaaaaaccaaAGTATCACATCAACAACGACTGGTTAGTctggaaaagaaattaaaactaAAGCCAAGGagcagcatttttcttttcaggatTAATCTGTTGACAGGCTAAACACCCTGCGAGCAAATACAGTACACGTTTATAAATAAGATTCCTTTGTTCATGGTTAAGACTCAACAatttaaagtgttttgtttccACTCTCGCCTAAAGCCGTgtactctgaacagatgagatgtcCGTTTTGAACTTTAATTGAAGAATAAACGCACACGTGTCCGTCGAGTCGTCTTTAAACgacatgttttctgtttttaccATTATTCAGACCAGAGAGGCTAAACAAGATCCTAGAAAATGCTTTGAAAACATTTCCATTGTTCAGTGAGCTgcctttaaacaaacaaaaactagtTCCTGAACTACCAAATGCTCTGTGCGAGTCATTTAAATTCCTTTAAGCTTGagggtggagtgtgtgttcatcttGTTTATCTGCTACCAAGTTTATAAAGtcattttgaaaaacaaaaatttcaTGCTACTTCCATGAAAAACAGAATGTCAATATATTACATCAATATTGATAAATTAGATGtgctttttaactttattgcAGCTCAAGTTCACAGTTTAAAACCTTCGTTCTTGTTCCTTTCAAGTGTTTCTAGTTGTTAAAAGCCATCAGACAAAAAAAGGGCCCCCTGACTCCACCATCACATCACTGCGTACGCTTTGAGTAAACTCACGTCTTCATGTAGTCCTTGATGTAGGCTGTGTAAGACTTCTTGTCGTAGCTGGTTTCCTGAAGCTTGTGGTTGAGGACAATGTCGACGCCAGAGACCATTGTCGACTCACAGCCTTCGTCCAGGACCTCAGCGGATGCGTTGCCACCGATCAGCGAATCGTCGATCTCTCCCTCTGATCTGCTGATCATCTTCCCTCGACTTCGATCATCATTCCGTTCTCCGACTCCTTGATTTTGTAGATGTCCGAGAACATCTCATCTCGGTGATGATGTCCTTGTAGATGATCATTTTGTCGGATTGTGGAGCGGTGTTTCAGGAGGCGCTGGCTCTGACTGCAGCCCGGCGGAG
>TU444908
ttttttttctttACACCTTTAGCCAGCAgcttgactttatttatttcacaaataGTTCCAAGAAATCCTATACAATCCCGTGATTTGAAGGAGATgggagggggaggagggggtGGGAATAATACCTGTACAACTGCCGTCTGAGCGCCGACATGCACACAGCAAAACCAATTCCCAGGCAGTCAAActtgatgaaattaaaaaaataaaccctaAAGTGAGCTGTATCATGTCTTCTTCCTCTGACAATGCAAAGCTCTCTGCAATTTGATCCAGCTCACTAAAATACTGTTCACCCCATGAGCTGGTGTGTGGAGGGGCTTTGAGTTCTTCTGGATGGACACTGATTATAGGAATCGAAGCGGTGGCcgtagaggaggaggaggaggaggtttaAAAGAGCTTCCGGTCCTGATCCTGATGGAGACGAGTGGAATGAGTGATCTGATCCAAAAGCTTTTACGGCCATCCGCTGATGAGAAGCAGTCTGGGACACGAGCAGGGTAGTTTGCATTTCTCAATCTCAAGACCGTCTTTGAAGAAGAGCATGAACGGTGTCACTCCGTCCTCACGGAAGTCGAGCAGACCAATTGAGCCATCGGGGTTCATGGATTCACCTGTGAAAAACTGCACCAAAGATGATTTTGGTCAGAGGGAGAACTACAAAAGCAGAGCTTTTACTTTCAGGGTTCAGTCGTACTCAGGATATGATTTAGTTTCATTGGTCGTGACCTCCAAAGGTGTCCTAAGATCGTCATCACCGTACGTTTATCGAGATCATTCGAGGCCCTCTcttgaggaacacacacacatatgcagatAGTTACCTGGAAGTTCTTGATGTTgcctaggattttcttgacctCAGCTGGAGCATTAGCCATGAAGGGCTCTACCCGTTCAGGAGACGTTTCCTGCAGTTTGGCCTTCACCGTCTTCATGTAGTCCTTGATGTAGGCTGTGTAAGACTTCTTGTCGTAGCTGGTTTCCTGAAGCTTGTGGTTGAGGACAATGTCGACGCCAGAGACCATTGTCGACTCACAGCCTTCGTCCAGGACCTCAGCGGATGCGTTGCCACCGATCAGCGAATCGTCGATCTCTCCCTCTGATCTGCTGATCATCTTTTCCCTCGACTTCGATCATCATTCCGTTCTCCGACTCCTTGATTTTGTAGATGTCCGAGAACATCTCATCTCCGGTGATGATGTCCTTGTAGATGATCATTTTGTCGGATTGTGGAGCGGTGTTTCAGGAGGCGCTGGCTCTGACTGCAGCCCGGCGGAG
>TU444909
CTGCAGTGTTCCTTCACGGCAATACCTGAAGAGTTAAATTCTGTGGAAGgcaagttttaaataaataaatcttaactCTCTACACAAGACACCTTTAGCCAGCAgcttgactttatttatttcacaaataGTTCCAAGAAATCCTATACAATCCCGTGATTTGAAGGAGATgggagggggaggagggggtGGGAATAATACCTGTACAACTGCCGTCTGAGCGCCGACATGCACACAGCAAAACCAATTCCCAGGCAGTCAAActtgatgaaattaaaaaaataaaccctaAAGTGAGCTGTATCATGTCTTCTTCCTCTGACAATGCAAAGCTCTCTGCAATTTGATCCAGCTCACTAAAATACTGTTCACCCCATGAGCTGGTGTGTGGAGGGGCTTTGAGTTCTTCTGGATGGACACTGATTATAGGAATCGAAGCGGTGGCcgtagaggaggaggaggaggaggtttaAAAGAGCTTCCGGTCCTGATCCTGATGGAGACGAGTGGAATGAGTGATCTGATCCAAAAGCTTTTACGGCCATCCGCTGATGAGAAGCAGTCTGGGACACGAGCAGGGTAGTTTACATTTCTCAATCTCAAGACCGTCTTTGAAGAAGAGCATGAACGGTGTCACTCCGTCCTCACGGAAGTCGAGCAGACCAATTGAGCCATCGGGGTTCATGGATTCACCTGTGAAAAACTGCACCAAAGATGATTTTGGTCAGAGGGAGAACTACAAAAGCAGAGCTTTTACTTTCAGGGTTCAGTCGTACTCAGGATATGATTTAGTTTCATTGGTCGTGACCTCCAAAGGTGTCCTAAGATCGTCATCACCGTACGTTTATCGAGATCATTCGAGGCCCTCTcttgaggaacacacacacatatgcagatAGTTACCTGGAAGTTCTTGATGTTgcctaggattttcttgacctCAGCTGGAGCATTAGCCATGAAGGGCTCTACCCGTTCAGGAGACGTTTCCTGCAGTTTGGCCTTCACCCTGTCGCAGAGAACAAGCACGTATTCAGCGTACAGTGAGGCACACGGTTTCACCAACAAGGGATTAAATTTAGTACCATCAAAAGAAGTCATGTTGTCCCCAATTCAATCTCCTAAGTCACAGACAGAACATGAAGAAAGCGCAGGGACGGTTTATTTAGCATCTATAATTTAAAACCCACTCACTCACAAGAGAAGTAACCGGGCTGTCAACAGATGCCAAaggggggaggaaaaaaaaaaataataataataataaaaaaccaaAGTATCACATCAACAACGACTGGTTAGTctggaaaagaaattaaaactaAAGCCAAGGagcagcatttttcttttcaggatTAATCTGTTGACAGGCTAAACACCCTGCGAGCAAATACAGTACACGTTTATAAATAAGATTCCTTTGTTCATGGTTAAGACTCAACAatttaaagtgttttgtttccACTCTCGCCTAAAGCCGTgtactctgaacagatgagatgtcCGTTTTGAACTTTAATTGAAGAATAAACGCACACGTGTCCGTCGAGTCGTCTTTAAACgacatgttttctgtttttaccATTATTCAGACCAGAGAGGCTAAACAAGATCCTAGAAAATGCTTTGAAAACATTTCCATTGTTCAGTGAGCTgcctttaaacaaacaaaaactagtTCCTGAACTACCAAATGCTCTGTGCGAGTCATTTAAATTCCTTTAAGCTTGagggtggagtgtgtgttcatcttGTTTATCTGCTACCAAGTTTATAAAGtcattttgaaaaacaaaaatttcaTGCTACTTCCATGAAAAACAGAATGTCAATATATTACATCAATATTGATAAATTAGATGtgctttttaactttattgcAGCTCAAGTTCACAGTTTAAAACCTTCGTTCTTGTTCCTTTCAAGTGTTTCTAGTTGTTAAAAGCCATCAGACAAAAAAAGGGCCCCCTGACTCCACCATCACATCACTGCGTACGCTTTGAGTAAACTCACGTCTTCATGTAGTCCTTGATGTAGGCTGTGTAAGACTTCTTGTCGTAGCTGGTTTCCTGAAGCTTGTGGTTGAGGACAATGTCGACGCCAGAGACCATTGTCGACTCACAGCCTTCGTCCAGGACCTCAGCGGATGCGTTGCCACCGATCAGCGAATCGTCGATCTCTCCCTCTGATCTGCTGATCATCTATAGAAACAAACATGACGCATTGGTGAAAACGTCGTTCCGCTGGAAGGCTCAGGAATCAACATTACTCCATGCTGAGTTGGCCGTAACAGGAAACCGAATGACATGCTTAGGGGATAAACTCAAAGAATGGGACATAGTGATATTTGGACGTCAATCCTGATTCCAAACATGCCACCTCTTCCCCTCCTTGGATTCAGCAGGTTAGATGCATGCTGGAGCATTTCTACAGGCTAATTATTGAGTGTTTAAGTTTGTTTACAGACTCAAAACTCACTACATTGAATTCATAACTTCGCAATTACCTAATTTTTGTCCAAAACAGAGAGACGCAAATCATACAAAACACCACAACCTAATGCATTAATGCTatttaatgacacacacactccgtgcGACGATTTTGCTGCTTTACTTGTTGTCTGGTTCGAGGCCATTTCCATTTTAGCAGCGGTGCAGTTTCTCATCCGAACATGTTTAAGAACTCGTTCCATTTACACCAAAACTGCCCTGAAGCCTTAAAGTCACTGCTATGAATGAAACAATATGTATTATTTAGCGACTCTTGTGTTTTACTTAACTTACAAAAGCCTTCATATtcataaaaagagaaaactatGAAGTATAACAATCTGTGAGCATTCCCCAACGGGCTGTAGCGATACAGTGAACCGCAGCGCTCTATCTGAAGTAAAGCGTCCTgcttttctgattattttctgacAATCCCTCGAAGTTACGCCAGCAGAGCTTCAGGCCTGACTGGGACTGTTTTGAAATGACAAACATGTGGGCATCACGGTGAACTTGTTTCCAAAGCAAAAAACGTAGAAAACTTTTTCCTAAtagctgaaatttttttttgctgagatCTGGCAACCCCGCACAGGTGTTCACTCATTTCTCAAATCTGAGAAAtctttgttttctctcagcGGCTGTACGTTTTATAACGTCGAAAACATTTTAATCGATTGAAAACGGAAACCCATGACACGTTCACGCTCATTTGCTGTATCGTATCAAGACGCCACCGTGTCGAAATTAAATCCTATTTTGTGCATCATTACATCCCTAGACGAAATGTAACGTTAACGTGATTCGCACTGACTGCGACCTACAGCCATTTTTCCTTAAAATTCCTACGACTTCAAACGTTTTATACAAAACGAGTCTACAGCCGTTCCCACTTTGAAGTAATTTTAATCACTCTGAAACGCCGCATACTGCCGTTTACGCAAATAAGCCATCATTTGAAAAGAAACGGTCGTCAGTATAAGTTTTTCCCCAGGCAATATTAGCAAACAGTCTTCCTCTAATGCTCTTGGAATTCTGAATCCGACCCGGTGTGATCGATTCCTCACGGTATTCCAAAGCTGCTGATTTCTCTCAAATTCCTGAAacgtgtgcgcgcacacacacacacacacacacacacacagagcaaaaacCAACCAACGTAGTGGAGAGTTTAGATTCTTTaagcactatttaaaaaaataacttctATGAGGTGAAACCAGACTCGGCGTGAGAGTCTCAGGGAAGGGTGGATGCTCGGATCGAGAGTCAGTCCTGCATGTGACTCACTGTGTGATGAGTCAAACAACTGAATCACTCATTTAAATCAAACATTAATACGGGATTTCTAAATtcaggaaggggaaaaaaaaaagaagtgtacACATGGATGATAGGGTTTGATTACCTTTCCCTCGACTTCGATCATCATTCCGTTCTCCGACTCCTTGATTTTGTAGATGTCCGAGAACATCTCATCTCCTGAAAGATGAAGGAAAGGCAGAGTTACAGAGTCAGTACAAGCTGATCACACAGACACTCAACTGATCCAAAGggcttaaaaaatatatatatatctatctctctgaGATGACAATCGAGACTAAATCCTCTCTCCTGTCCTGTTTGCCAGACCATTTCATTCACCAAATCAGCTGATCCTCAACTGATCCCAGATGAAGTGAAATGGATCCGAGGCCTGGAAAATTCATCAAGCCTGTGATATTTACTCAGCTAGCTAAAACTAGAGATGATTAATATCTAAAATAAGCGCAAATCCCACTCAGAAACTCGTGAGTTAGAACAGACACTGGCACAAAGCTGGTGACTCTGAGTGAGCTTTACAGAGGTGAGGAGAGTAAATTAGCTCAGAGCTACGTGTCCATttaaagaggagaaaaaaaaaaactcggcTAGTCAACATGCCGGCATTTTAGCATAACAGCTAACAAGCTAATAAAGTGATTTTTGTTTAATTCGTGACTTGTCATTTTCTTGAAATGTACCCGAATTTCTTCTCCAGATATGTCTAAACTCTACACACTCACTCTAGGgtgggagaaaataaaaaaagacaagcctTTTTAATACAACGCTAGCGGCGTGTAAGCGCGCGAGCTCCTGGGTGTAAATGCTAGCTATGCTAACTAGGCCTCAGGCTTCACCGAGACACGGGGCATAAAAACAACCGAAAAGcgtaaaaacacagaaaatatcGGCAGGGTCAGACCGGGGGAAGCCCTCAGACCGCGTTAGGGAGCATTCTCACCGGTGATGATGTCCTTGTAGATGATCATTTTGTCGGATTGTGGAGCGGTGTTTCAGGAGGCGCTGGCTCTGACTGCAGCCCGGCGGAG

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444906 False 3777 lncRNA 0.42 3 14036341 14042614
TU444908 False 1284 TUCP 0.48 6 14023250 14042614
TU444909 True 4858 lncRNA 0.42 2 14036341 14042614

Neighbor

gene id symbol gene type direction distance location
klf12a klf12a,LOC108259023,LOC107757647,LOC107691613,LOC107567993,LOC107734581,LOC108437773 coding upstream 80327 13917963 ~ 13942923 (+)
kctd12.2 LOC108259021,LOC107655163,LOC107580539 coding upstream 188259 13832326 ~ 13834991 (+)
slc5a7a LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545 coding upstream 210884 13802400 ~ 13812366 (+)
arl6 arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991 coding upstream 228916 13788562 ~ 13794334 (+)
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding upstream 251400 13637632 ~ 13771850 (+)
LOC113537730 LOC108258676 coding downstream 1345 14043959 ~ 14060786 (+)
LOC113537316 NA coding downstream 32472 14075086 ~ 14084654 (+)
LOC113537635 NA coding downstream 78424 14121038 ~ 14127293 (+)
LOC113537615 crgm2,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260664,LOC108260582,LOC108260580,LOC108441183,LOC108427435 coding downstream 132278 14174892 ~ 14180996 (+)
junba junb coding downstream 296128 14338742 ~ 14340428 (+)
G375710 NA non-coding upstream 1715 14021150 ~ 14021535 (+)
G375496 NA non-coding upstream 226715 13702127 ~ 13796535 (+)
LOC117596173 NA non-coding upstream 468650 13534288 ~ 13554600 (+)
G375431 LOC108258891 non-coding upstream 544991 13476476 ~ 13478259 (+)
G375422 NA non-coding upstream 586193 13436647 ~ 13437057 (+)
G375739 NA non-coding downstream 96765 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 148284 14190898 ~ 14192300 (+)
G375774 NA non-coding downstream 161061 14203675 ~ 14204359 (+)
LOC113537225 NA non-coding downstream 205073 14247687 ~ 14267611 (+)
LOC117596176 NA non-coding downstream 284755 14327369 ~ 14328701 (+)
gpalpp1 gpalpp1 other upstream 2119 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1897055 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2955248 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 3013630 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3763719 10213033 ~ 10259531 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 316128 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1037073 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1071853 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 1323185 15365799 ~ 15400404 (+)
G376467 NA other downstream 1378785 15421399 ~ 15424798 (+)

Expression


Co-expression Network