G375431 (LOC108258891)


Basic Information

Item Value
gene id G375431
gene name LOC108258891
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13476476 ~ 13478259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444602
AAgataaaacagttttatttacagaaataaaaatcatacaCTTATTTAAAAAGACATGACAGATCAGCGATGAGCATAATCTCAGACATAAGCAGCACGCTCTCTACTGGTTTGAGATGCTGGTTTGTAGTGGCCCATTTGCTTTCCTCTACTGCTGGGCCAAGAGGTGCACAGAAGCCCTCCGCCAATCACCATGAGCACAGCAGCCCCCCAACAGATAAAGATGGATGCCCCCAGCTCCCTCTTTTGTGACTGGGCCACCAACGGATTGTAGAAGTCTCTGATCACTGCGTTTGCCATCCAGCTGGGCGGCACGAGACTCAGAAGCCCTGCGATGAGAAAGAAAACCCCAGCTGCTGTAGCCACCCTGGCCTTGGCAGTGCTTTGGTCCAAGCAGTTTGTGCACTTGCCTCCAGCTATGCTAGCAAGTATGGCCACCAGGGCGACCAATGGAGCGATGACGAGAATGGCCCGAGAGGCTTGAAGGTCTGAAGACAGAGCCAGCATAGAGTCATAAACCTTGCACTGCATTTGGCCAGTGCTCTGCACCACACAGGTCATCCACAAACCCTCCCAGACGACCTGTGCCGTCACAATGTTGTTGCCGATGAAAGCAGTCACGCGCCATAGTGGGAGAGCGCAGGCCAAGATGGTTCCCAGCCAGCCCAGCACCCCCAGTGTGGTACCAAGCATCTGTAGCCCTGCAGACATGGCAGCTTTTGGGCAGAGATGGATTCAATCTGGAAGCTTTGACGCGTTTGCAATAGAAATAAAAACCAGCAAATAAAATCATAAGAAAAGCCTTAGGTGACCAAAAAGCTGCTGTTCCTGAAGGTAAGCACTAAACTAACACCATTAGCACACTAAACCCACAATACACAAAACTTGCGTCCTGCTGTCACAGCTTTTATAGGTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444602 True 919 lncRNA 0.50 2 13476476 13478259

Neighbor

gene id symbol gene type direction distance location
htr1fb htr1f,LOC108258890 coding upstream 415 13454723 ~ 13476061 (+)
chmp2bb chmp2b,chm2b,chmp2bb,LOC107691601,LOC107552237,LOC107654764,LOC107598748 coding upstream 40643 13428573 ~ 13435833 (+)
dhrsx dhrsx,LOC108437760 coding upstream 81696 13353925 ~ 13394780 (+)
mxra5a mxra5 coding upstream 174360 13288826 ~ 13302116 (+)
prkx prkx,LOC106575200 coding upstream 206059 13233884 ~ 13270417 (+)
znf654 znf654 coding downstream 563 13478822 ~ 13490069 (+)
arl13b arl13b coding downstream 12072 13490331 ~ 13502491 (+)
nsun3 nsun3 coding downstream 29814 13508073 ~ 13517770 (+)
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding downstream 159373 13637632 ~ 13771850 (+)
arl6 arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991 coding downstream 310303 13788562 ~ 13794334 (+)
G375422 NA non-coding upstream 39419 13436647 ~ 13437057 (+)
G375270 NA non-coding upstream 153607 13321273 ~ 13322869 (+)
LOC117596171 NA non-coding upstream 361320 13110314 ~ 13115156 (+)
G375249 NA non-coding upstream 382055 13094222 ~ 13094421 (+)
G375238 NA non-coding upstream 440974 13035210 ~ 13035502 (+)
LOC117596173 NA non-coding downstream 56029 13534288 ~ 13554600 (+)
G375496 NA non-coding downstream 223868 13702127 ~ 13796535 (+)
G375710 NA non-coding downstream 542891 14021150 ~ 14021535 (+)
G375739 NA non-coding downstream 661120 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 712639 14190898 ~ 14192300 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1350281 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2408474 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 2466856 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3216945 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 3599923 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 538264 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 544991 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 880483 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1601428 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1636208 15114467 ~ 15116878 (+)

Expression


Co-expression Network