arl6 (arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991)


Basic Information

Item Value
gene id arl6
gene name arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13788562 ~ 13794334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932042.2
GCTCTGGTCACTAAGCAACGCCGTGTCAACCTCCAAACCTGAAACAGCGCCTTGTGTTAAAGCTTCATAGATGTTAAATACCGCTGGCTGTAACCACTAATATgtggtgttaatgtgtttacatgctgttattttgaCATGAGATTTCATTATTTACACCGCAGACTGGCGTGAACTGCAGCTATAACTGCGCCAAACCAGTAGAAAAAACAAGAGTCGCTgccacctaaaaaaaaaaaaaaaaaaaatccaatggGGCTCTTCGACAAGCTGGCGGGATGGCTGGGCCTGAAGAAGAAGGAGGTGAACGTGCTTTGTTTGGGTTTGGACAACAGCGGAAAGACCACCATCATCAATCAGCTGAAGCCGTCCAACGCTCAAGCACAAGACATCGTCCCCACTATTGGATTCAGCATAGAGAAATTCAAGACGTCAAGTCTGTCGTTCACAGTGTTTGACATGTCAGGCCAGGGCAGGTATAGAAACCTATGGGAGCACTATTACAAGGAAGGACAGGCCATCATATTTGTCATTGACAGCAGTGATAAGCTGCGAATGGTGGTCGCCAAAGAAGAGCTTGATACTCTCCTTAACCATCCTGATGTCAAACACAGGAGGATCCCCATCCTGTTCTTTGCTAATAAAATGGATCTAAGAGACGCTCTGTCCTCAGTGAAGGTCTCTCAGCTCCTCTGCCTGGAGAACATCAAAGATAAACCGTGGCACATCTGtgccAGTAACGCTGTCCAGGGGGAGGGTCTACAGGAGGGAGTCGACTGGCTGCAAGATCAGATCCGAACCATGAGAACATGAAACGCTCGTAGAATCCCGAGAAAAAACACCATGTCGCCGATTCCACTTCACAAACCAAATCTCCTTCACAGGGCACGCTGAGCCGTCTGTTCAGGAAGCTCAGGGTTTGGGAGTGTGAGATGCTTTGATTCTGTTGCACCTTTATAGATCGTTTGTGTTGAAAATAGCCAGCAGATTAGGTCAGTTTCACTAGTTGTACtagtgtgtataaaatataataaatgtgcacataaacacattataCCTCAGCTAAAAGCTGGCAAaggttttacatatttttttcaggaaaCCAAGCAAAACAGTCCACAAacttattatttcatttatttattatgtcaCATCAGATTAATGTCATTGTTTCACAGCAGGGAAATATTTACAAGTTACTATAAGAGGTTTAGGAGGTATTTCATTCCGATTATTGTATGAtcgttaatgtgtttttttttttgttgtttttttttaagtgactgATGTAGCATTGTAAAGAACTTTCCAAGAGGTTTTGCTGGTGTGTAGATATCATGTAATATTGGCTTACCAGACAtttcaaagttttatttaatcacTGCTTTACTTAATTTTATAATTCCAACCACAAAAAGACACTAAAAGATTATTTACAGTGTGTTGCATATAAACTCAGCTGTCCtgcatgctttaaaaaaatgtagttttctACTCATTTTCTGTTTCAAATCTGTCTTATACTGTAATTTAAAGAGTAAACGGTCTATAAGTAAA

Function

symbol description
arl6 Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032402 melanosome transport biological_process
GO:0007601 visual perception biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0033339 pectoral fin development biological_process
GO:0060170 ciliary membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07951 ARL6, BBS3; ADP-ribosylation factor-like protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932042.2 True 1557 mRNA 0.40 8 13788562 13794334

Neighbor

gene id symbol gene type direction distance location
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding upstream 16712 13637632 ~ 13771850 (+)
nsun3 nsun3 coding upstream 270792 13508073 ~ 13517770 (+)
arl13b arl13b coding upstream 286071 13490331 ~ 13502491 (+)
znf654 znf654 coding upstream 298493 13478822 ~ 13490069 (+)
htr1fb htr1f,LOC108258890 coding upstream 312501 13454723 ~ 13476061 (+)
slc5a7a LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545 coding downstream 8066 13802400 ~ 13812366 (+)
kctd12.2 LOC108259021,LOC107655163,LOC107580539 coding downstream 37992 13832326 ~ 13834991 (+)
klf12a klf12a,LOC108259023,LOC107757647,LOC107691613,LOC107567993,LOC107734581,LOC108437773 coding downstream 123629 13917963 ~ 13942923 (+)
gtf2f2a t2fb,gtf2f2a,LOC108437770,LOC103042992,LOC107654862,LOC107734568,LOC107757644,LOC107691617 coding downstream 229155 14023489 ~ 14033839 (+)
LOC113537730 LOC108258676 coding downstream 249625 14043959 ~ 14060786 (+)
LOC117596173 NA non-coding upstream 233962 13534288 ~ 13554600 (+)
G375431 LOC108258891 non-coding upstream 310303 13476476 ~ 13478259 (+)
G375422 NA non-coding upstream 351505 13436647 ~ 13437057 (+)
G375270 NA non-coding upstream 465693 13321273 ~ 13322869 (+)
LOC117596171 NA non-coding upstream 673406 13110314 ~ 13115156 (+)
G375710 NA non-coding downstream 226816 14021150 ~ 14021535 (+)
G375739 NA non-coding downstream 345045 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 396564 14190898 ~ 14192300 (+)
G375774 NA non-coding downstream 409341 14203675 ~ 14204359 (+)
LOC113537225 NA non-coding downstream 453353 14247687 ~ 14267611 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1662367 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2720560 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 2778942 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3529031 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 3912009 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 222189 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 228916 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 564408 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1285353 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1320133 15114467 ~ 15116878 (+)

Expression


Co-expression Network