slc5a7a (LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545)


Basic Information

Item Value
gene id slc5a7a
gene name LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13802400 ~ 13812366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931701.2
TGTGCGTGTGAAAAGTGCGGGACTGCTTCGTTACTGAAGGCGGACTCTGCGCTCTCTGCGTCACGGCGCGCACCGCacacttcatttatttcacttccCAGTCGGTGCCTGGTGTTTGTCTGGTGCTCCTGCATAAAGGTCTCCTCCATGCCAGTGAGGTGTTCAGAAGCGCAGTGAAGATGGCCATCCATGTGGAAGGGCTGGTGGCGATCGTCATCTTCTACTTACTGATCCTCGGCGTGGGAATATGGGCCGCCTGGAAGAACAAGAACTCCGGCGTGGAGGAGGGAGCGGACCGCAGTGAGACCATCATGGTCGGGGGGAGAGACATCGGACTGTTCGTGGGAGCGTTTACCATGACCGCTACGTGGGTGGGAGGTGGATACATTAACGGCACGGCTGAATATGTGTATCTGCCTGGTTTCGGCTTGGCCTGGGCGCAGGCTCCCTTTGGATACGCCATGAGTCTCGTACTGGGTGGCCTGTTCTTCGCCAAGCCCATGCGCTCCCGCGGCTACGTCACCATGTTGGACCCTTTCCAGCAGCTGTACGGAAAGCGCATGGGCGGCCTGCTCTTCATCCCCGCGCTCATGGGGGAGATCTTCTGGTCGGCCGCCATCTTATCAGCCCTCGgAGCAACACTGAGTGTCATTGTGGACATTGATATTAACATGTCAGTCATCATTTCTGCCTTCATCGCCATTTTCTACACACTGGTTGGTGGTGTTTACTCAGTGGCCTACACAGACGTGGTTCAGCTCTTCTGCATCTTTGCGGGACTGTGGATCAGTGTCCCGTTTGCGCTCTCAAACCCTGCTGTGTCTGACATCGGCCTGACTGCAGTAAAGGAGCTCTACCAAGATCCCTGGCTGGGGTCGATCGAAAGCACAGATAAATGGATGTGGGCAGACAACTTCTGCCTTCTGATGTTGGGGGGAATTCCCTGGCAAGTCTATTTCCAACGGGTTCTTTCTGCCTCTTCAGCTACCTATGCCCAAGTCCTTTCCTTCCTGGCTGCCTTCGGCTGCATCATTATGGCCATACCCTCCATCCTGATCGGAGCTATTGGAGCCTCCACAGATTGGAATCAGACGACCTATGGGCCAAACCCTCCTAtgaagaacgacgagtcagaaATGATTCTTCCAATCGTGTTGCAGTACCTGTGCCCTCCCTATGTCTCCTTCTTTGGGCTGGGGGCAGTGTCTGCTGCGGTGATGTCATCGGCTGACTCATCCATCCTTTCAGCCAGTTCCATGTTCGCCAGGAACATCTACCAACTGGCTTTCCGCCAGTCGGCATCAGACAGTGAGATAGTCTGGGTCATGCGGATCACCATCTTTGTTTTTGGTGCTCTGGCAACGGCCATGGCTCTCCTGACAGGTACAGTGTATGGGCTCTGGTACCTAAGCTCAGACCTGGTCTACGTGATCATCTTCCCACAGCTCCTCAGCGTCCTGTTTGTGCGAGGCACCAACACCTATGGTTCAGTGGCAGGCTACGTCTTCGGCCTGATCTTGCGCGTCGGCGGCGGTGAGCCTTACCTCAAACTGCCCCCATTTATCTACTACCCGGGCTGGTACGTCATGGAAAAGGTGCACCACAAAACGGGGGAAGTGGAACATCTGATAATGCAGAGGTTTCCTTTCAAGACGGTCTCCATGCTGGCCTCCTTCCTGGGCAACGTAGCCTTCTCCTACCTTTTCAAGTACTTGTTTGAGAGTGGCACACTGTCAGCCAAGTATGACTTCCTGGATGCGGTAGTGGCCAAGCACAGTGCTGAGATCATGGACAGGACCACGCTGGTGAACAGGAATGTTATCGGGCTGAATGAGATGGCACCAGTGCGGCCACGTCTCAGCGTCACTTTGGCCAGCACCTTCAGCAGGAAAGAAACCCTcactgaagaggaggaggaggactcCAGCCCAGAGTCTCCTATTCATGAAAATGAGTAAAGACCACTACATTTTCAATTAGGACCATGGCCATGATGGGAAGGACAGTGCCTCGTGAGATGTACATCCTTGACAACGGATGAAAATGGACAGTTAACCATATGTACTGGATTTTCCATTGCTGCAGCAGGATAAGCCAAAATGGCAAAACAGGAGCAAATGTGGAAGAAACGTGACAAATTGCATCATATATTACATCATTCCAGTGGAAAGCAGGTTTGCTTCAGTATGGTATGTATAAACCCTGAACTCAATTTGCTCCTCTGCTCTGAGGGAGAACCCTAGATACTGTGACTATACCATTACCATTGAGGCAATATTTATTTCTCTGAACCTTATCCTAGGTCAGGACTCATTTACAAAacctaaataaaatacactgtgCATTAGCTTACAGGTTTAATGACTATGTACCCAAAATCAGAGCCCCATGTTATACAGTATAGCATAGATCATCTTATCATCTTGtacttaaaatgtataaaaaatagtTACTAGCTGTTCCATTAATCTAGCAAATTGTTTCAATCCCATtgatgatatacagtatatggcatAACTATGAGATAATTACACGTCcagtatattcatatttttgtgtaaatttgagaACAGGATGGGGAAATTGATGTTACAATCGCCTTAACTAGCTGCGCTGTTCAAATAGAAATTCAAATGGTTCCCTGCtctctatgtagtgcactatatatcaGTGCAGGTGCCATTTCAAATTAGCTTGATATTATGCAAACGGTTCAGCAGCCACTTTCTTAGAAAAGGAAGTTGCTGCTACAAAAGACTAAAGGATATGTGCTGTTATATTTTATCTGCAAACTCATAACTGCGGTGTATAGTCTGAGGCTGAGTCAGTGTTCATTTGTTGTCTTTTCTTGTCTgatgtgtacatatatactgtatatattaatatattttaaagatgtacaaagtcataattttattttactgtgttgGTAGAGTTACTCAGTTTGGTGAGAAAAAGGTTTTAGGCCaataaatctatatttatttatttattctggcCTTAAAAAGATTCTAAATGTAgaagaaatcataaataaattct

Function

NR:

description
PREDICTED: high-affinity choline transporter 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14387 SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931701.2 True 3042 mRNA 0.48 9 13802400 13812366

Neighbor

gene id symbol gene type direction distance location
arl6 arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991 coding upstream 8066 13788562 ~ 13794334 (+)
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding upstream 30550 13637632 ~ 13771850 (+)
nsun3 nsun3 coding upstream 284630 13508073 ~ 13517770 (+)
arl13b arl13b coding upstream 299909 13490331 ~ 13502491 (+)
znf654 znf654 coding upstream 312331 13478822 ~ 13490069 (+)
kctd12.2 LOC108259021,LOC107655163,LOC107580539 coding downstream 19960 13832326 ~ 13834991 (+)
klf12a klf12a,LOC108259023,LOC107757647,LOC107691613,LOC107567993,LOC107734581,LOC108437773 coding downstream 105597 13917963 ~ 13942923 (+)
gtf2f2a t2fb,gtf2f2a,LOC108437770,LOC103042992,LOC107654862,LOC107734568,LOC107757644,LOC107691617 coding downstream 211123 14023489 ~ 14033839 (+)
LOC113537730 LOC108258676 coding downstream 231593 14043959 ~ 14060786 (+)
LOC113537316 NA coding downstream 262720 14075086 ~ 14084654 (+)
G375496 NA non-coding upstream 5865 13702127 ~ 13796535 (+)
LOC117596173 NA non-coding upstream 247800 13534288 ~ 13554600 (+)
G375431 LOC108258891 non-coding upstream 324141 13476476 ~ 13478259 (+)
G375422 NA non-coding upstream 365343 13436647 ~ 13437057 (+)
G375270 NA non-coding upstream 479531 13321273 ~ 13322869 (+)
G375710 NA non-coding downstream 208784 14021150 ~ 14021535 (+)
G375739 NA non-coding downstream 327013 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 378532 14190898 ~ 14192300 (+)
G375774 NA non-coding downstream 391309 14203675 ~ 14204359 (+)
LOC113537225 NA non-coding downstream 435321 14247687 ~ 14267611 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1676205 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2734398 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 2792780 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3542869 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 3925847 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 204157 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 210884 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 546376 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1267321 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1302101 15114467 ~ 15116878 (+)

Expression


Co-expression Network