G373955 (LOC108258951)


Basic Information

Item Value
gene id G373955
gene name LOC108258951
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11006008 ~ 11009620 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442901
GTTCCGTGTTAAATgtctaaactttatttaaagctAGGACAGTAAGTActcaaaaggaaaaatatatattttaacaacaaGGGTAAGGGTTAAGCAAACCCAATAGTGCAAAGGAAAAACAAGGCATGTGTGtggagagggagacaggagTAAAAGTCAAGAAGGAAGACTTACAAACTCAATGAGAAgagtaacaaaatacaaaaacaattagtatatgcattaaaaatgtcatgataaacacacacaaatgccaAGCTCATCCCACAGTTCTTTTGTCTTGAATAATTCATTTTGGCATGTTCTGTGAACTCCACAATTCATGCCAGTCCAAGGCAACTCacttttaaaaagagagaaacaaaatagtttttctaATTgtaattagtagtagtagttattgcaCATACAGGACTTTTAAGCCATATACTGATAGCGTACTATTAATAGCGTTAGGGTATGGCACTACCATTTGAATGATCAGCCTGTTCTTTCCCCCTTAAAATCTTCCTTTTTTTGGCATTAAGACAAACCTGGGAAGACCCTGACAGACAGCAAGGAACACTGAAAGGTGCATTGGCAAACTGTAGTCTATACATTACCTGTCAAGAAGCTATCAGTCTTTTCGCATATTGTGGAGTAGTAGGGATGTGGTGCGTTAAGATCCAAGTCTTGTTGGTGCTCCGAGGAGGAAGCGCTATCCAAGCCTGTCTCAGTGGGGACAGTGCCTCCTAGTGAGCAAGGCTCTGGCAACTCCTCAGTGACCTTCTCACAAAGCATGTACTGCTGCTCTGAGTTCACCGGAAGCTCCCCTTGCTGGTCAAGGAGGTCAACATCTGCAGGAGCACAGGCAGGTGAAAGGTTCAGCTCCTTAATAAGTGATGGGTCTTTGGCCTCATCCGGAAGCTGCTCTTCATTTTCGAGAGAAAAAATGCCTGGGCTTTTGATACAGCTCTCTGTGGTAGATTGGGCATTAGAATTAGAGGTGGTGCACTCAAAACCATAGGAGGCAGCTGAAGTGGCAGACTGCGGCGTGTCACTACCACCACCTCCCTCCATCTCAACACAGGCCTCCTCACATTCCTCCACCAAGGCTGACATGCTGTGGACAACTTGGGTGCTATCAAAGCATTCGTTTCCAGTGGAACCAGGTTCAGTAGGGTCACTGATCTGCATGTCCCCTTCTGTGTCACTAGCCTCATCCCCTGTGGCAGAAGAATGGGAGGATGGTGCAGAAGTTGTCACCGTTGACAGACCAGCCAACATGTCATCTGCAGGCAGAGTCTCAGGTTCTTCCTCTTCATGTTCAGATCCTGCACGATCAGATCTACAGATACCTAAATCCTGCATGATGTCTGGCAAAGCAACAGGAATTGGGCTAGCTGGTAAGGGCTGTTTTTGGTTCTCTAGTCCAGGGCTTATACTGTAGTCTTTTAGCTCCTCAGGTGTGCTTGCATCACTGCAAGTATGGATGGCTAGTTCTGTGCCAAGCAAAGTGCTAGACTGAGAAATGCGTTGGGAATGGGATGCCAAGCCTGGTTTGATGCCCATATCCATCTCTGCAGCAGGCTCTGAAGAAGGCTGAGGTGAGCTTGGAACAGGATCCGTAAGAGCTGGAGGCTGAGTTGAGGATAGATCTGTTTTGGCATTTCCAATATCCAGACAGGCTTGAGCGGCAGGTTGGTTAGGCAATTCTGAGTATGTTTGCCAAGGGTTGGAAGAAGGACTGGAGTCAAGGGTAGGATCTGGTTGTAGTGACTGCATCCAGGCATCAGCAAAAGGATTTGCTGCAGAAAGGGCAGTAGGAACAATGGATGAAGGCTGCATACGGTTCAAGTTGTCCAATCTGTAGTCTTCTGCCAAGTCATCTTCATCTGCATTTCCATAACTTTCAAGGCCACTCTCCGTAACACCCTCACTTGCCATCTCCACATCATCGTCTTCATCCTCATTATCATTGCACTGCCTGTGTGGGTCTTCTGTCATTTCTGATCCTACTTCCATATCATCAACACGATcttcgtcatcatcatcatcatcgtcgtcatcattatcatcatcttcattgACCAGAATATCAGGGAACTTCTCAAAGTCTGGAGAGCCAGCTGATGCACCTTCACCATCAGCACCTTTTAGGCTAGCCTCACCTAGATCATCCATACTTTCAGTGCCCTCTAAAACACCAGGAGCACTAAGCTCTGAGGCCCCCTGCTGGCTGCAGCTTACATCCTCAGAGTCAAATTCTGAGGGCAGGCCTCCTGCTCGCCATACTGAACCAGCCAGACCAGCTGAACCAGGCCTGGACTCTTCAGTAGGCTGTGTACCACTCATGTCAGACAGAGACACCTGCTGACTGCCCtccctctcctcttcctcttcatcatcaaGATTGCGAATTATTTGCTCTTGCTTCTCAACAATCTCCAAGTCCTTAGCGGGGACCTCACATGGTGAAGCAGTTACAGATTCTTGCTCTGTCATCTCTTGTGCCATTGGTGGTATGGTCGCAGTGtagtcatgatttttttcagattcTGGTACAACAGGTGGAGGATTAGACATTAAAAGTACAGGCACCTCAGCTACTGACTGTATAGCTAATGGGTCAGCATCTGTTGTCTCTTTGGTGGAAACAATGTCCACATTTGTAGGCTCTGAGGCAGGTATTTGCACTCCTTCTCCCTGACCTTCCACAAATGCACTGGTCTGTTGATCAGGCTGTGCTACCTCTACTGAAGGAGTTTGTGCTTCTACCACAGATTCTACAGGTGCTATGGCTGCACTTGTTACAGAGGCAGTTGTTTCCAAAATTGCAGAGGGTTCCACAGACTCTGATGACTGTTCTTCTAAAGGCTTTCCTTTGATGACTAATGGCAAAACAGATTGCGTTGGTTTGGCTGTTTGACGCTTCACAGAGACTAGGTTACTACTTACTCCCTGCTTGTGGTTACCAAACTCTGTAGCCATTTTGCCTGAAGCAGTGCGTGAGGAAGTGTTTCGGGGACTTGGAGGGACCTTCCGTGTTGGTACTTGCCTAGTTTCATCCATTTTTGGTTGAGATGTTTTAGTGTCTGTAGGTAATCGTTTGGCAGCTGTAACAGGTTTGGGGGGTTCAGGTTTGGAGGCCTTTGTAGCTGTAGAGCGTGTGGTGGTAGAGGCTAACGGTTTTCTGGCCACTGCACTGGTGGTGGTTTTTATATCTTTTTTTAGCTGCTATGGTAGTGGAGACCTTAGAAGGCTGTGATGATGCAGAGTGGGCAGCAGAGGGAGCAGAGACAGTTGTTCTTAAGGCTGAAGATTTACTAGCAGTGGTTGTTAGTCTAACTGGCGCTGAGGAAGTGGTAGGACGAGAAGCAGTTGCTACAGTAGGCCTAAAGCACAAAAAACAATGCTAGATAATTTGaaacattaaaattttattaacattGAAAGAGGGAGCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442901 True 3447 TUCP 0.46 2 11006008 11009620

Neighbor

gene id symbol gene type direction distance location
c26h19orf67 NA coding upstream 4330 10996738 ~ 11001678 (+)
pnpla6 LOC108258612 coding upstream 78157 10894036 ~ 10927851 (+)
LOC117596166 NA coding upstream 119209 10883180 ~ 10886799 (+)
LOC117596104 NA coding upstream 122821 10879995 ~ 10883187 (+)
LOC113537595 NA coding upstream 157694 10842546 ~ 10848314 (+)
serhl serhl2 coding downstream 43474 11053094 ~ 11059498 (+)
sept3 sept3 coding downstream 58389 11068009 ~ 11079689 (+)
atf7ip atf7ip coding downstream 74922 11084542 ~ 11129515 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding downstream 129769 11139389 ~ 11241579 (+)
si:ch211-243a20.4 NA coding downstream 251108 11260728 ~ 11268151 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 40853 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 54528 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 72205 10929744 ~ 10933803 (+)
G373871 NA non-coding upstream 194991 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 198564 10806240 ~ 10807444 (+)
G373975 NA non-coding downstream 60502 11070122 ~ 11091105 (+)
G373982 NA non-coding downstream 125933 11135553 ~ 11135936 (+)
G373997 NA non-coding downstream 270196 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 398635 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 463079 11472699 ~ 11472973 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 746477 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1129455 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2535794 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2852153 8149960 ~ 8153855 (+)
LOC113537319 LOC108258902 other upstream 5436713 5560082 ~ 5569295 (+)
LOC113537724 sept3 other downstream 52396 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1099951 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 3006903 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 3013630 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3349122 14358742 ~ 14360604 (+)

Expression


Co-expression Network