LOC113537595


Basic Information

Item Value
gene id LOC113537595
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10842546 ~ 10848314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932163.2
tttgttacattttgttatatttgtgATGGAGGAAAAACTGAACGCACGCGACTTCTCTGAGTATTaatgttgccatggcaacaattTCTTATAAAGCACAGAATTTCGTTTGGAGTTGTTCAGTTAGTACTTATACCAGCGATCATTCACATCAAAGATGGAAGCAAAATGTACGTCAAAGATGAATAATCTGGAAACAGAAGTAATCGGAGGAGAAAATGCTGGAATGTCCTGGCAGGAGCTCAGGTGCTTCAGAGACATCCTGGACGTTGTCCTCAATCTAAATGATGAGGAATGGAAGGCATTGACGAAGGATATGCCAAATGTGGGCACAAGAATGGAGTATGCAGGTCTTTGTACAAGAATCGTGATATCGGTTTTGAAATCTGCAATTGAAAGATACCTGACAATAGTGATTGAGGTCATGGGAATTGAATCGCTTCTCATTGCCCAAGAAAAGCTGaaggaaaagggggaaaatgtgTCAAAGGGTGCAGCTGCTACCCCAGACAGCAGATCTTCATCAGAGGAAAgATCAGTGGACCTGTCTGATTTCATCTGTGACAGTCTGGACAGTTTTGTCAACAGTGTGAAAATGGCAATGCAAGAGGCGATCTGGAAGACTGCCTCTGGAAAAACCTTGCTATTTGCTGAAAACTGGAAGACATGCAGTCACGTCACTAGAGAGATGTTACATATCCTGTTGGCCAAATTGAAACCGTCTCGCACAGAGGCACAGTTAAGGTCAGAGGCACAGGTAAGTTTAAACACTGAAGCTATTGCTGGGAAAGTTGTTTTGGTTGTGTTAGAAGACATGGAAGGCACCAGAGTGGGAAGACTTGATCTTAAACAAAGCAGGGATTTGCTAATTGCTGCTTCAGAGCAGATAAAACACCTGGCTTCGTTATCTAGCTCGGTGGAAAGTcttaataagaaagaaaaggcTCAACTGTCCCATCAACACTTCCAGACTGAAGCTCACAGGGCTGTAAGCCAAGTGCTTCTCATAAACACTGGAGTCTTGGAGATGGACACCAGTGACTCTGACTTGCCACACAGCCATACTTGTCAGGCAGAGCTCTCCGATGCCTTGCTCGTTCAAGTAGACTCAACATCTAGGGACATTGTAGAAACAGTTAAAAGTCACCTGGACATTTTGGCATCATCTGGTTACTCTGAGGCTAAAGGTGCTGGATTTATTTCAGTGATACACCACATGTTCCACACTGTACATGAGAAGGTGAAGATGTTTTTTAAAGTGTCCAGGAAACCTGTGAAAGAAAATGTCACAGAGAATTTTGATACGGTGCAACAAAAAAGTTCCACAGCTACATCCACAACTAGCAGTGAGACTTTGGTGGACAAACCTGACCGTGCTGCCAAGTCAGAGAAAAGAACATCAAGCCATCTTTCCCAGCTAGATTCAGAAGTTTCTCTGAGATCCCATCAGATAATACAAGGGGTCATGCAGGCACTGGAAAACCTTGTTAATCACAGCAGTAACTCTCAAATGAGTGAAGTAAGCAGAGCAAAGCAGGAGGAGGACAGGTACATCTCACGTCCTGGATCAGGGATTGCTACTGATGAAAGAGCATCTGGTGTTCCTTCAACTCACCAAACTGTAGATGTTTCCAGTAAGCAGTTTAATCACAAGACAGTCCAGACAGTGAGTGATATCCTCCTCAAACCAGGGAAAGAAGCCGTAGATCGGCTTGAGAGCGCAACTTTCGTCACGGTAGAGTCAGTAGCGTCCGACATTATGGAAGATTTTGTTAAAGATTTAGAGAAAATGTCCTCATCTAATCAAATGAACCATGGGCAAAACCAAAGTGTGACTGAACCAACACCTTCACAGCATTTTGCTGATCAAAGATTTTACAAAAGGATGGAGAAGAAGGTGTTTGGATTTCTCCTGAGGCTCCAAAAAACCCCACAGGTTTTCCAGGAGGAGACGAGTGCACAAAGAGCAGATCCTGAGAATCTGTCAGTTAGTACACCTTCTCCCCATCTGGTATCACCAAAACTCCAGGATAAATTTGACCAAACAGCAGGAGAGGAAACCGCTTCTAGTGAACATCCTGAACTGTGCAAGGTTGAATCAGAAAtgccaagcacatcacacattgGTGTTTCTACAAAAGCTTTACATTCAACTGATGTCACTGAATGTTCCTCCACTGTGCCAGAAATGAGCACTGACCAGGTCATGCAAATCTACATCAGTGAGAATGGCACCATCTTTGAGAAGCCTTATTCAGTTCCTGATCAGTTTCAAAGGTCAGGCTCTGACAGAGCCCGATTGGAGAACATGGCATCTGATGCTTATGGTCCTCCAAATTTAGCATCAAACATTAAGATGGATTTTGTAGCAGGACCGTCACACACTATAGGCAGTTCATGGGATTCAAAGCCAGTGGCACCATGTGGGAAGAAGCGGCAGCTGAACAATCCTGTTCTTTTACAAGCGTTAAAGATACTGGCAGAGGAGACAGTTAAGCACCTGTTTGTCCACTTCCACAGCCTTAAACCTTCAAAAGTGGCTGAACAACTGGCATCTTTAGCTTCCTCTTTCCAAAACAAGCCAGATTTCAACAAATTAACTGGCTTTCCTCATGATGTTCCTGAGGCAGTAAGCCAGTTCACTGAGACTCTTACAGACTCAGTGATAAAATCCTTAACTTCAACTGTGGAAGTGACATCAGAAGCAAAATTAACAAAAGCATTTGCTGAGAGGATCCCAGGTACCAAGTCTCCTGACTCCATGACCACACCTTCAAACAAGTCTTCCACTTCTCTGGTAGACGAGAATCTGGATAGTCTTTGGAGACAGGAGAGCCATTGCTGCCAAATCCCAAACAATGGCAGCATTTCTTTGGATCCAGCTCCTGAAGTGCAACGGAGAGCTTCCTGGATTCGTTTCATTGCTGGGAAGAAAGCTTATGAGATCAACAAAAAGAAACGTCCAATTGTCCCTATGTCTTCAAATATCAGTCGACCTTTTCTGGAAATCTTCAGGAGGATTCATGTAGAGAATCAAAATCTTCAGGACCAGCAGGCAAAGCAGTTTGTCACCGTCCATCCAGGACGTCCTCAAGAGTCTCCAAAGCCCTGAGACAGCCCTTCAGTCAACGAGGTTCAACCTAATTCAACGCAGCTGAAGACCTGAAAAATGTGCAGTGTTTCTCTTTAAATATGAATGGAAAATAAACG
>XM_034300035.1
GGTGCCTTAGGGAACCCAGACCTCAATGAggcatgatttttaaaatacatatgcaaaaaaaaatacagtttactCATTAAACAGGGTAAATAAAGTCACGAAGAATGGGCGATAATGAAATGTTCATATCTATCTGGGGAAAAAACGGACATAAAACACCTAGATGGAAGCAAAATGTACGTCAAAGATGAATAATCTGGAAACAGAAGTAATCGGAGGAGAAAATGCTGGAATGTCCTGGCAGGAGCTCAGGTGCTTCAGAGACATCCTGGACGTTGTCCTCAATCTAAATGATGAGGAATGGAAGGCATTGACGAAGGATATGCCAAATGTGGGCACAAGAATGGAGTATGCAGGTCTTTGTACAAGAATCGTGATATCGGTTTTGAAATCTGCAATTGAAAGATACCTGACAATAGTGATTGAGGTCATGGGAATTGAATCGCTTCTCATTGCCCAAGAAAAGCTGaaggaaaagggggaaaatgtgTCAAAGGGTGCAGCTGCTACCCCAGACAGCAGATCTTCATCAGAGGAAAgATCAGTGGACCTGTCTGATTTCATCTGTGACAGTCTGGACAGTTTTGTCAACAGTGTGAAAATGGCAATGCAAGAGGCGATCTGGAAGACTGCCTCTGGAAAAACCTTGCTATTTGCTGAAAACTGGAAGACATGCAGTCACGTCACTAGAGAGATGTTACATATCCTGTTGGCCAAATTGAAACCGTCTCGCACAGAGGCACAGTTAAGGTCAGAGGCACAGGTAAGTTTAAACACTGAAGCTATTGCTGGGAAAGTTGTTTTGGTTGTGTTAGAAGACATGGAAGGCACCAGAGTGGGAAGACTTGATCTTAAACAAAGCAGGGATTTGCTAATTGCTGCTTCAGAGCAGATAAAACACCTGGCTTCGTTATCTAGCTCGGTGGAAAGTcttaataagaaagaaaaggcTCAACTGTCCCATCAACACTTCCAGACTGAAGCTCACAGGGCTGTAAGCCAAGTGCTTCTCATAAACACTGGAGTCTTGGAGATGGACACCAGTGACTCTGACTTGCCACACAGCCATACTTGTCAGGCAGAGCTCTCCGATGCCTTGCTCGTTCAAGTAGACTCAACATCTAGGGACATTGTAGAAACAGTTAAAAGTCACCTGGACATTTTGGCATCATCTGGTTACTCTGAGGCTAAAGGTGCTGGATTTATTTCAGTGATACACCACATGTTCCACACTGTACATGAGAAGGTGAAGATGTTTTTTAAAGTGTCCAGGAAACCTGTGAAAGAAAATGTCACAGAGAATTTTGATACGGTGCAACAAAAAAGTTCCACAGCTACATCCACAACTAGCAGTGAGACTTTGGTGGACAAACCTGACCGTGCTGCCAAGTCAGAGAAAAGAACATCAAGCCATCTTTCCCAGCTAGATTCAGAAGTTTCTCTGAGATCCCATCAGATAATACAAGGGGTCATGCAGGCACTGGAAAACCTTGTTAATCACAGCAGTAACTCTCAAATGAGTGAAGTAAGCAGAGCAAAGCAGGAGGAGGACAGGTACATCTCACGTCCTGGATCAGGGATTGCTACTGATGAAAGAGCATCTGGTGTTCCTTCAACTCACCAAACTGTAGATGTTTCCAGTAAGCAGTTTAATCACAAGACAGTCCAGACAGTGAGTGATATCCTCCTCAAACCAGGGAAAGAAGCCGTAGATCGGCTTGAGAGCGCAACTTTCGTCACGGTAGAGTCAGTAGCGTCCGACATTATGGAAGATTTTGTTAAAGATTTAGAGAAAATGTCCTCATCTAATCAAATGAACCATGGGCAAAACCAAAGTGTGACTGAACCAACACCTTCACAGCATTTTGCTGATCAAAGATTTTACAAAAGGATGGAGAAGAAGGTGTTTGGATTTCTCCTGAGGCTCCAAAAAACCCCACAGGTTTTCCAGGAGGAGACGAGTGCACAAAGAGCAGATCCTGAGAATCTGTCAGTTAGTACACCTTCTCCCCATCTGGTATCACCAAAACTCCAGGATAAATTTGACCAAACAGCAGGAGAGGAAACCGCTTCTAGTGAACATCCTGAACTGTGCAAGGTTGAATCAGAAAtgccaagcacatcacacattgGTGTTTCTACAAAAGCTTTACATTCAACTGATGTCACTGAATGTTCCTCCACTGTGCCAGAAATGAGCACTGACCAGGTCATGCAAATCTACATCAGTGAGAATGGCACCATCTTTGAGAAGCCTTATTCAGTTCCTGATCAGTTTCAAAGGTCAGGCTCTGACAGAGCCCGATTGGAGAACATGGCATCTGATGCTTATGGTCCTCCAAATTTAGCATCAAACATTAAGATGGATTTTGTAGCAGGACCGTCACACACTATAGGCAGTTCATGGGATTCAAAGCCAGTGGCACCATGTGGGAAGAAGCGGCAGCTGAACAATCCTGTTCTTTTACAAGCGTTAAAGATACTGGCAGAGGAGACAGTTAAGCACCTGTTTGTCCACTTCCACAGCCTTAAACCTTCAAAAGTGGCTGAACAACTGGCATCTTTAGCTTCCTCTTTCCAAAACAAGCCAGATTTCAACAAATTAACTGGCTTTCCTCATGATGTTCCTGAGGCAGTAAGCCAGTTCACTGAGACTCTTACAGACTCAGTGATAAAATCCTTAACTTCAACTGTGGAAGTGACATCAGAAGCAAAATTAACAAAAGCATTTGCTGAGAGGATCCCAGGTACCAAGTCTCCTGACTCCATGACCACACCTTCAAACAAGTCTTCCACTTCTCTGGTAGACGAGAATCTGGATAGTCTTTGGAGACAGGAGAGCCATTGCTGCCAAATCCCAAACAATGGCAGCATTTCTTTGGATCCAGCTCCTGAAGTGCAACGGAGAGCTTCCTGGATTCGTTTCATTGCTGGGAAGAAAGCTTATGAGATCAACAAAAAGAAACGTCCAATTGTCCCTATGTCTTCAAATATCAGTCGACCTTTTCTGGAAATCTTCAGGAGGATTCATGTAGAGAATCAAAATCTTCAGGACCAGCAGGCAAAGCAGTTTGTCACCGTCCATCCAGGACGTCCTCAAGAGTCTCCAAAGCCCTGAGACAGCCCTTCAGTCAACGAGGTTCAACCTAATTCAACGCAGCTGAAGACCTGAAAAATGTGCAGTGTTTCTCTTTAAATATGAATGGAAAATAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932163.2 False 3210 mRNA 0.44 7 10843170 10848314
XM_034300035.1 True 3216 mRNA 0.44 7 10842546 10848314

Neighbor

gene id symbol gene type direction distance location
atp11a atp11a,LOC107718450 coding upstream 184828 10564386 ~ 10657718 (+)
cdadc1 cdadc1 coding upstream 420388 10412101 ~ 10422158 (+)
rcbtb1 rcbtb1,LOC107676891 coding upstream 432509 10400361 ~ 10410037 (+)
ebpl ebpl,LOC107718395,LOC107746301 coding upstream 444364 10392145 ~ 10398182 (+)
kpna3 kpna3,LOC103046682,LOC107746270,LOC107676880 coding upstream 451483 10367115 ~ 10391063 (+)
LOC117596104 NA coding downstream 31681 10879995 ~ 10883187 (+)
LOC117596166 NA coding downstream 34866 10883180 ~ 10886799 (+)
pnpla6 LOC108258612 coding downstream 45722 10894036 ~ 10927851 (+)
c26h19orf67 NA coding downstream 148424 10996738 ~ 11001678 (+)
serhl serhl2 coding downstream 204780 11053094 ~ 11059498 (+)
G373871 NA non-coding upstream 31529 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 35102 10806240 ~ 10807444 (+)
G373522 NA non-coding upstream 179034 10645863 ~ 10663512 (+)
G373538 NA non-coding upstream 268051 10511081 ~ 10574495 (+)
G373540 NA non-coding upstream 311880 10528816 ~ 10530666 (+)
LOC113537644 NA non-coding downstream 81430 10929744 ~ 10933803 (+)
G373934 NA non-coding downstream 100617 10948931 ~ 10951480 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding downstream 113425 10961739 ~ 10965155 (+)
G373975 NA non-coding downstream 221808 11070122 ~ 11091105 (+)
G373982 NA non-coding downstream 287239 11135553 ~ 11135936 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 583015 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 965993 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2372332 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2688691 8149960 ~ 8153855 (+)
LOC113537319 LOC108258902 other upstream 5273251 5560082 ~ 5569295 (+)
G373955 LOC108258951 other downstream 157694 11006008 ~ 11009620 (+)
LOC113537724 sept3 other downstream 213702 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1261257 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 3168209 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 3174936 14023250 ~ 14042614 (+)

Expression


Co-expression Network