G373522


Basic Information

Item Value
gene id G373522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10645863 ~ 10663512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442398
ttttttttatttaatttttttgctttggctattctctctttctttgtttaacattttagcTGCTTGTGAGTAGGTGCCTTGTGGTTGATGCACATCCATTGAGTTAGGAAGCTAAAATAAGTCCAGGATGcttcaatactttttttttctccaaacccTCAACATTATGCGAGAAAGGCCAAGGtcaatactttatttattggTGTCATGTGACATTATTTTAGAGATTTGCAAGAGTTGCCAGGTGTTACTTTGGAaagatgtcagtttttttttttttttgtgagagtTTAAATGTATGTCATGCCACAATCAAAATAGAAATGCTATATATTAACGTGTGTCTGTGATGAGGTTTACAGTTATAGAATGAATttaggaatgaatgaatgaactaatGAACAATCTAACTTGAATGGATGACTTCGCTTCTGGTCCAAAGCTGCATTGCTCAATGTGTCTGAATGTAATCGTCATTTATTATTCAAACTCCAACACATCATCAGTTAATTACTCAAACTCCAACACATCATCAGTTAATTACTCGAACACTTCATTAGTTAATTACTCAAACTCAAACACATCATCAGTTAATCAGAGTCTGGATGTTTGCATGTTAACGGTAGCTGCTAAGCTTAATCATGtgtctttttatatttctgctAATTTATATATTAGCATATATCTTACAGGTTCGGGGTTAATAGGCTTTTGCTCAGTGACTCTGTGGCAGAACTTACACCTGAACTGTAACCACTGAACTTATatattgtaatgcattttccTCAGCTTTGATTTGTCATTCCTGAATTCAAAAATGATCAGTTGCAAGAGCAGTTGTAAATCCTGAAACCAAACCAATTGCATTCTGAATGTTgtcattttgtcccttttttagTTACTACAACTATATACGGGTCTGTTTTTACAACCACTGTCATACATTAATATAACGAAACTAAATCCACTGGAAATGtaaacttttattcattttaacactgtttgtttttattctgagAAATGTCTAAGATTCTGAATGTATTCAAGGAGAAGTCTGGTCAAAAAAGTGCAAACGTTGCTGACGAGGAGTGAAAGAAACATCCACCAGTCAGCGTTGTTTCATTTGGCTAATATGTAATTTATATCATCCACCAGTAGTTAATCACTTCTTTTGTGTAAGTCATAGTTGCGAACAATTACACTAATGATGTGAACTGTGCACATTTCTGTGAACATTGCTTCAGGAAGGCAGTGCAGGAATGAATCCTTCACAGATGCGTTATATCAGGGGGAAGACACTTGTGTTGctcttttgagattttttttcttttccgagTCCGACAAGCCACTGTATTGTGTAGGAATTATTTCTACGCCAGGAATCAGGTGATCGCTGGACACTGGTCTCTGTTAAAACACTGGCTCTTATCCTATAGAACTGACAgatgtataaatattttgtatatcttatgaaaaaaaaaaagtctttttgctattttttgtATTCAGAGGTTTAGAAAATACCACTCGGTATTTACGGTATTAGTTTGTTTTATACCAACCAAAATTGGAGATACGGCAGACAACGGCAACATCAAACCAGTGAACAGAAGAGGCTGTGAAACAGCTTTAATCTTCTGCTCTTTCTACGATCTCACTTTACGATTTTGAGTTTGCAGTAGTCATGTCGACGTGCACTGTTTGAGGACGCATCACACTGAAACTAGAAGACACTTTGATGTCCATTCGCTGCTGTTCAGAAAGTGTGACCAAATACTATTCTAGATGTCTATACTGTTGTAAAGGCTTTACTGACTCTAGTGGGGCTAAACCAACGCCAGCCTATTCACATTAACCGAATGtctatttgcttttttttttttattatttcttttttttccctcaattcGTCAGCACAAAGTGTGATGTTGCTCTTAACTAAGtctatagtgtatatttaaaatgtatgtatactactgtacactgtacagtatatatgtagTCATATGAATCACTGTACAGTTTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442398 True 2029 lncRNA 0.35 2 10645863 10663512

Neighbor

gene id symbol gene type direction distance location
cdadc1 cdadc1 coding upstream 223705 10412101 ~ 10422158 (+)
rcbtb1 rcbtb1,LOC107676891 coding upstream 235826 10400361 ~ 10410037 (+)
ebpl ebpl,LOC107718395,LOC107746301 coding upstream 247681 10392145 ~ 10398182 (+)
kpna3 kpna3,LOC103046682,LOC107746270,LOC107676880 coding upstream 254800 10367115 ~ 10391063 (+)
spryd7a spryd7,spryd7a,LOC107718900,LOC107676840,LOC107580268,LOC107746271 coding upstream 279453 10338846 ~ 10366410 (+)
LOC113537595 NA coding downstream 179034 10842546 ~ 10848314 (+)
LOC117596104 NA coding downstream 216483 10879995 ~ 10883187 (+)
LOC117596166 NA coding downstream 219668 10883180 ~ 10886799 (+)
pnpla6 LOC108258612 coding downstream 230524 10894036 ~ 10927851 (+)
c26h19orf67 NA coding downstream 333226 10996738 ~ 11001678 (+)
G373538 NA non-coding upstream 71368 10511081 ~ 10574495 (+)
G373540 NA non-coding upstream 115197 10528816 ~ 10530666 (+)
G373474 NA non-coding upstream 368124 10276931 ~ 10277739 (+)
G373453 NA non-coding upstream 471348 10173971 ~ 10174515 (+)
G373439 NA non-coding upstream 542164 10103423 ~ 10103699 (+)
G373870 NA non-coding downstream 142728 10806240 ~ 10807444 (+)
G373871 NA non-coding downstream 146314 10809826 ~ 10811017 (+)
LOC113537644 NA non-coding downstream 266232 10929744 ~ 10933803 (+)
G373934 NA non-coding downstream 285419 10948931 ~ 10951480 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding downstream 298227 10961739 ~ 10965155 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 386332 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 769310 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2175649 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2492008 8149960 ~ 8153855 (+)
LOC113537319 LOC108258902 other upstream 5076568 5560082 ~ 5569295 (+)
G373955 LOC108258951 other downstream 342496 11006008 ~ 11009620 (+)
LOC113537724 sept3 other downstream 398504 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1446059 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 3353011 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 3359738 14023250 ~ 14042614 (+)

Expression


Co-expression Network