gpalpp1 (gpalpp1)


Basic Information

Item Value
gene id gpalpp1
gene name gpalpp1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14016523 ~ 14021131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931619.2
AAGTGAAATTGTACTTCCGGACTTTTATTCTGAAACCGGAAGTTTGCATTTTTATGTGCGCTAGTAATAAATTcctagcttattattattattatatttgaatgaatttgtaGCCATGTCGAGTGATAATATAATCGGACCTGCTTTACCACCGGGGTTACGAGCGAGCAGAAGTGATGAATCAGATGAAGACAACACGATCATAGGCCCAGCTCTGCCCCCGCTTTATAAACGCACAGAGTCCTCCAGTTCCTCCAGTGATCAGGAACAGGTGGTGTTCAAGAGAGCCAAATACTCAGGATCAGGGGACAGTCTGCCTTCTAAGAAGAGAGCAGCAGCTGGgaggtgtgatgatgatgatgatgatggtgatgcaGATGCAGTGGATGAGGATGATGGCTTCTTCGGTCCAGCTCTACCTCCAGGATACCAAAAGCAAGACAGTTCACCTGAAAGACCCCCAGTCCTTGGACCCGCGCTGCCTCCAGGCTTTAAAAGGAAGCATCACGATgacgaggatgaggaagaggatgaaggAAGAGGGGTTCTAGGACCGGCACTTCCTCCTGGATACAAAGCGGAGTCTTCCAGCAGTGAGGGAGAAAACGAGGACGTCATCGGGCCCATGCCGTCCAGAGGGGAAAGTCAGAGTAACGTGGCACTGGACTTTGAAAGAAGAGCACAGAGAATGAAGGACAGATTACTGGGGCGAGATGATGAGTCTGAGAAGCCGCAGAGGGAGAGCTGGATGACGGAGCTGCCTCCTGAGCTGCAGCATGTCGGACTGGAAGCACGAACCTTTAAGAAGAGATCAGGACCCGAGAACAAGGACCGCTCCATCTGGACCGACACGCCCGCCGACCGAGAACGCAAAGCCAGGgAGCGACAAGAAGCGaaagagagaggtgagacagtCAAAGATGACGGCCCTCGTCTCTCCAAGAAAGATCTGGAAATGGCAgaaaaagtgtccaaatacaacgagtccaagagaggcGAGTCGCTCCTGAGCATGCACGCCAAGAAAATGAAGAGGAAAGCCGAGGAGGATTCCAAAAAGCCGGCGGAGAGGAGGCCCTTCGACCGAGACGCCGACCTGCAGGTCAATCGCTTCGACGAGGCGCAGAAAAAAGCCCTGCTGAAGAAGAGTCAAGAGCTCAACACGCGCTTCTCACACAGCAAGGATCGAATGTTCCTCTGAGGAACGGGAAATGTTGTTAAAAACATCAGCCAAGCATCTCAATAATTGCTTGACTGAAAGCACGGACtcctttaaaggtgcagtttgtaatgtctaaagttaatgtttattttgttattatgtaATATCAGAAGattcattagaaaaaaataagaaatacaaaACATAATTCCACATATTGCCAAGCGATAGATAATCCTGGTTTCTTCTGTTCAgatttctggccctgaaatgaGCTCCGCCACCAAGGACTTCTCCATAAAAGGCAACACAATGAATATAAAGTTTTAACAGGGCTTAGGGTTGGGTGAAGAAAAGTGAAAGGCTTatacattgttttcattttaatcgCAGTTTAGTGGGTTGTAAAAGTTACAAACGGCTCCTTTAAAGACAGCAATGTACTGGAAATCTGAGCATCGTGCTGCAGCATTGGTTATTTTTAGGGTAGTTTGAACAAGTGAACCAAAATGAcgatcatttcaaaataaattgaACGGGTTATCTTGCGAAGTGATAAATCACGTAAGTGTGTAAGcttgtctgatttttaaatattaaatcccATTCAGTCATCTCTGGGTTTTTTGTAAACTAAGCAGTGCATCAGCAGGGTTTAAAACATTGAAAAATAGTGTAGAAAGTGCACAGGAgcagaaaaaatatattctttGTTACATTAGTATGATACAGGACTCTTTAGTATGTACAGGAATCTTTACTTTGTtgtttgggttgtttttttgttttttttttttaaataagaggatGTGATGTCAgatattattttgtgtgttttttttctgtgctgtatTTTCACGCTTTTGTTAAGATgagataaataaacatttcacagaggatttgaatatatata
>XR_004577362.1
AAGTGAAATTGTACTTCCGGACTTTTATTCTGAAACCGGAAGTTTGCATTTTTATGTGCGCTAGTAATAAATTcctagcttattattattattatatttgaatgaatttgtaGCCATGTCGAGTGATAATATAATCGGACCTGCTTTACCACCGGGGTTACGAGCGAGCAGAAGTGATGAATCAGATGAAGACAACACGATCATAGGCCCAGCTCTGCCCCCGCTTTATAAACGCACAGAGTCCTCCAGTTCCTCCAGTGATCAGGAACAGGTGGTGTTCAAGAGAGCCAAATACTCAGGATCAGGGGACAGTCTGCCTTCTAAGAAGAGAGCAGCAGCTGGgaggtgtgatgatgatgatgatgatggtgatgcaGATGCAGTGGATGAGGATGATGGCTTCTTCGGTCCAGCTCTACCTCCAGGATACCAAAAGCAAGACAGTTCACCTGAAAGACCCCCAGTCCTTGGACCCGCGCTGCCTCCAGGCTTTAAAAGGAAGCATCACGATgacgaggatgaggaagaggatgaaggAAGAGGGGTTCTAGGACCGGCACTTCCTCCTGGATACAAAGCGGAGTCTTCCAGCAGTGAGGGAGAAAACGAGGACGTCATCGGGCCCATGCCGTCCAGAGGGGAAAGTCAGAGTAACGTGGCACTGGACTTTGAAAGAAGAGCACAGAGAATGAAGGACAGATTACTGGGGCGAGATGATGAGTCTGAGAAGCCGCAGAGGGAGAGCTGGATGACGGAGCTGCCTCCTGAGCTGCAGCATGTCGGACTGGAAGCACGAACCTTTAAGAAGAGATCAGGACCCGAGAACAAGGACCGCTCCATCTGGACCGACACGCCCGCCGACCGAGAACGCAAAGCCAGGgAGCGACAAGAAGCGaaagagagaggtgagacagtCAAAGATGACGGCCCTCGTCTCTCCAAGAAAGATCTGGAAATGGCAgaaaaagtgtccaaatacaacgagtccaagagaggcGAGTCGCTCCTGAGCATGCACGCCAAGAAAATGAAGAGGAAAGCCGAGGAGGATTCCAAAAAGCCGGCGGAGAGGAGGCCCTTCGACCGAGACGCCGACCTGCAGGTCAATCGCTTCGACGAGGCGCAGAAAAAAGCCCTGCTGAAGAAGAGTCAAGAGCTCAACACGCGCTTCTCACACAGCAAGGATCGAATGTTCCTCTGAGGAACGGGAAATGTTGTTAAAAACATCAGCCAAGCATCTCAATAATTGCTTGACTGAAAGCACGGACtcctttaaagatttctggccctgaaatgaGCTCCGCCACCAAGGACTTCTCCATAAAAGGCAACACAATGAATATAAAGTTTTAACAGGGCTTAGGGTTGGGTGAAGAAAAGTGAAAGGCTTatacattgttttcattttaatcgCAGTTTAGTGGGTTGTAAAAGTTACAAACGGCTCCTTTAAAGACAGCAATGTACTGGAAATCTGAGCATCGTGCTGCAGCATTGGTTATTTTTAGGGTAGTTTGAACAAGTGAACCAAAATGAcgatcatttcaaaataaattgaACGGGTTATCTTGCGAAGTGATAAATCACGTAAGTGTGTAAGcttgtctgatttttaaatattaaatcccATTCAGTCATCTCTGGGTTTTTTGTAAACTAAGCAGTGCATCAGCAGGGTTTAAAACATTGAAAAATAGTGTAGAAAGTGCACAGGAgcagaaaaaatatattctttGTTACATTAGTATGATACAGGACTCTTTAGTATGTACAGGAATCTTTACTTTGTtgtttgggttgtttttttgttttttttttttaaataagaggatGTGATGTCAgatattattttgtgtgttttttttctgtgctgtatTTTCACGCTTTTGTTAAGATgagataaataaacatttcacagaggatttgaatatatata

Function

symbol description
gpalpp1 Orthologous to human GPALPP1 (GPALPP motifs containing 1).

NR:

description
PREDICTED: GPALPP motifs-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931619.2 True 2075 mRNA 0.44 7 14016523 14021131
XR_004577362.1 False 1936 misc_RNA 0.45 8 14016523 14021131

Neighbor

gene id symbol gene type direction distance location
klf12a klf12a,LOC108259023,LOC107757647,LOC107691613,LOC107567993,LOC107734581,LOC108437773 coding upstream 73600 13917963 ~ 13942923 (+)
kctd12.2 LOC108259021,LOC107655163,LOC107580539 coding upstream 181532 13832326 ~ 13834991 (+)
slc5a7a LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545 coding upstream 204157 13802400 ~ 13812366 (+)
arl6 arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991 coding upstream 222189 13788562 ~ 13794334 (+)
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding upstream 244673 13637632 ~ 13771850 (+)
gtf2f2a t2fb,gtf2f2a,LOC108437770,LOC103042992,LOC107654862,LOC107734568,LOC107757644,LOC107691617 coding downstream 2358 14023489 ~ 14033839 (+)
LOC113537730 LOC108258676 coding downstream 22828 14043959 ~ 14060786 (+)
LOC113537316 NA coding downstream 53955 14075086 ~ 14084654 (+)
LOC113537635 NA coding downstream 99907 14121038 ~ 14127293 (+)
LOC113537615 crgm2,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260664,LOC108260582,LOC108260580,LOC108441183,LOC108427435 coding downstream 153761 14174892 ~ 14180996 (+)
G375496 NA non-coding upstream 219988 13702127 ~ 13796535 (+)
LOC117596173 NA non-coding upstream 461923 13534288 ~ 13554600 (+)
G375431 LOC108258891 non-coding upstream 538264 13476476 ~ 13478259 (+)
G375422 NA non-coding upstream 579466 13436647 ~ 13437057 (+)
G375270 NA non-coding upstream 693654 13321273 ~ 13322869 (+)
G375710 NA non-coding downstream 19 14021150 ~ 14021535 (+)
G375739 NA non-coding downstream 118248 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 169767 14190898 ~ 14192300 (+)
G375774 NA non-coding downstream 182544 14203675 ~ 14204359 (+)
LOC113537225 NA non-coding downstream 226556 14247687 ~ 14267611 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1890328 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2948521 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 3006903 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3756992 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 4139970 9839096 ~ 9876553 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2119 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 337611 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1058556 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1093336 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 1344668 15365799 ~ 15400404 (+)

Expression


Co-expression Network