smdt1b


Basic Information

Item Value
gene id smdt1b
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15114467 ~ 15116878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU445724
gctctcactctctctctctctccatatacAGAGCGCATAAAACAGGAAATATGGCTTTGGCAGCGCGCGCCCTGTTTCGGAGTTTCCTCACCAGGAATGTCGGATTAAACCCACGAAATATGAAAGAAGTTGCACTGAGTCGAAACGCGGTGACATCAACGTCGGGAGCCATACTCCCAAAACCAGATAAaACTCCGTTTGGTGTCGTGCGCATGACAGTGGTGGTGGTCCCGTTCCTCTACATAGGCACGCTCATCAGCAAGCAGTTTGCAGCTCTTCTGGAAGAGCATGATATCTTCgttcctgatgatgatgatgactgagTAACGTCAGGCTGGGTTGTGCTGtaCGACTGGGGAACCAAACCGTTGCTCACACTGAAGATAACTCTAAGCGGGATCAATGCAATAACGTTTACATTCACACCTTGCTTTCAGTGCCTGACTCTAAAGtttgattttgattatttacctTTTAAAGCTAAAGTTTAATCACCTCATGTATTTTTGCATGTACAGATTTGTttcagtggaa
>XM_026932050.2
CTcgcgctctcactctctctctctctccatatacAGAGCGCATAAAACAGGAAATATGGCTTTGGCAGCGCGCGCCCTGTTTCGGAGTTTCCTCACCAGGAATGTCGGATTAAACCCACGAAATATGAAAGAAGTTGCACTGAGTCGAAACGCGGTGACATCAACGTCGGGAGCCATACTCCCAAAACCAGATAAaACTCCGTTTGGTGTCGTGCGCATGACAGTGGTGGTGGTCCCGTTCCTCTACATAGGCACGCTCATCAGCAAGCAGTTTGCAGCTCTTCTGGAAGAGCATGATATCTTCgttcctgatgatgatgatgactgagTAACGTCAGGCTGGGTTGTGCTGtaCGACTGGGGAACCAAACCGTTGCTCACACTGAAGATAACTCTAAGCGGGATCAATGCAATAACGTTTACATTCACACCTTGCTTTCAGTGCCTGACTCTAAAGtttgattttgattatttacctTTTAAAGCTAAAGTTTAATCACCTCATGTATTTTTGCATGTACAGATTTGTttcagtggaataaaacacttgattCTGACTGA

Function

NR:

description
essential MCU regulator, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU445724 False 534 TUCP 0.46 3 15114472 15116856
XM_026932050.2 True 561 mRNA 0.45 3 15114467 15116878

Neighbor

gene id symbol gene type direction distance location
LOC113537365 ugp2a,LOC108258649,LOC108438596,LOC107757023 coding upstream 57246 15044012 ~ 15057221 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding upstream 71096 15035260 ~ 15043371 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding upstream 100007 15005828 ~ 15014460 (+)
LOC113537589 NA coding upstream 162289 14945645 ~ 14952178 (+)
LOC117596107 c26h1orf100 coding upstream 173866 14938005 ~ 14940601 (+)
si:ch211-133l11.10 NA coding downstream 41569 15158447 ~ 15162364 (+)
kif16ba kif16b,LOC107757030 coding downstream 93759 15210637 ~ 15237040 (+)
esf1 esf1,LOC107579043 coding downstream 158053 15274931 ~ 15284732 (+)
trnaq-cug_18 NA coding downstream 232376 15349254 ~ 15349325 (+)
psen2 psen2,LOC108258586 coding downstream 323010 15439888 ~ 15453548 (+)
LOC113537537 NA non-coding upstream 11053 15101039 ~ 15103414 (+)
G376287 NA non-coding upstream 111551 15002707 ~ 15002916 (+)
G376273 NA non-coding upstream 136489 14977773 ~ 14977978 (+)
G376242 NA non-coding upstream 198024 14910725 ~ 14916443 (+)
G376245 NA non-coding upstream 240966 14873223 ~ 14873501 (+)
G376393 NA non-coding downstream 592 15117470 ~ 15117890 (+)
G376409 NA non-coding downstream 31581 15148459 ~ 15148666 (+)
G376412 NA non-coding downstream 38376 15155254 ~ 15155481 (+)
G376405 LOC100194557 non-coding downstream 67631 15184509 ~ 15185982 (+)
G376455 NA non-coding downstream 212104 15328982 ~ 15385509 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other upstream 14562 15079687 ~ 15099905 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 753863 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 1071853 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 1093336 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2988272 12109571 ~ 12126195 (+)
jag1a jag1 other downstream 248921 15365799 ~ 15400404 (+)
G376467 NA other downstream 304521 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 374168 15491046 ~ 15492575 (+)
LOC113537700 NA other downstream 614784 15731662 ~ 15756178 (+)
LOC113537447 NA other downstream 641105 15757983 ~ 15765055 (+)

Expression


Co-expression Network