LOC113537537


Basic Information

Item Value
gene id LOC113537537
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15101039 ~ 15103414 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577282.1
tgctgtttttttttgcatgcttaTTTGCCAGAAGAGAGATTTAAGCTCGATGCCTCAGTGTAATAATTGTACTGCTTGTGCCTTTGGAGAATAACCTCTGACTACAGAGATCTttaaatggatgaataaattaaGACGTTATATTGCTTACTATGCTATCTGTTGTGCttttgcaaacaaacaaaaaaaacatagctaTGCAGTATGAACACCACGGTTCTCCCAGCATTCATACCTCCAggccatttcatttcatttgcttGGATCACTGTATGCATCTTTCACACCGTTCAGCCATTCTGCACGTCTGCATCCAACTGTTTCCTCTCCAAAACACCAGGAAACATACAAGCAGCAGGCATGTGCTGATATCAACATCTGCCTGATCTTTTGTCACAATTTATGCACAATATCACAGAATTGTACTGAAATATGTCTCCTTTACATCTATCCAGAAATAAGGACcttattttcacttttctgcCAAAAGTAATTACACCTGAATGTGCAgagtaattttatatttacattcatcaaAATATCCACAGACTCAAAACTGTGATTGTGACTGAAATTACGAGTGCGACCTTCACCGATCATAATGATGTTCATGTTGCGAGTTCACAGTTTACATGCTTACGACTTTTACGCTACATTTACAAATAACCTGTTATTCTGCCATTCAAGGGTCTTGACTGAAATATGTAACTATCGTAACATTTTTACAGCCTTGGGGGCATGGAGAGCATTAAAAAGTTGATGGGGCGTGGCCAGGTGGATGGCTCCAAAGAGCTGAGAGGGCAGGTTTAGGTCAATAGCTTTAAAAAGTTGAGTGGGTGTGGCCAGGCACATAGCTTTAAAATGCTGAGGGGGTGAGAACAAGTGGACACCTCCAGAGAGCTGAGGGAGTATGGTCAGGTGGATGGTTCCAGAGAACTAAGAGGACGGGATCAGGTGGATGACTCCTGAGAACCATGTGGACAGGGTCAGGTGGATGGTTCCAGAGAAAATTGGGGGAACCGAAGGGTCGGGGTCAGGTGGATGGCTCTGGGGAACTGTGGGGGAACCGAGTGGTCAGGTGGATGGCTCCGGAGAACTGTTCGGGAACCGAGTGGTCGGGGTCAGGTGGATGGCTCCGGAGAACTGTGGGGGAACCGAGTGGTCAGGGTCAGGTGGATAGCTTTTAAAAGTTGAGCAAAGTGGTCATCTCCAGAAAGCTGAGAGAGTAGAGTCAGGTGCACAGCTCTAGCAAGTTGAGAGGGTGGGGTCAGGTGGATGGCTTCAGAAAGCTGAGTCAGGTGCACAGCTCTGGAGCTGGAACTTTAGAACATTTTACAAATTGCAGCTATAAATTTTCAAATGTCTATAATAAAGCTGTGATACAAATTAGAAATTTATGACTATGAATTTACGATGTACAATTACTTTTATCAGAAAATTCTTACAAAAATATGTTCCTTATATGCCTCCTGAGTGGGACAGACTGTTATTTCTGCAAGCTCCCCACCTAGGCATCCTCACCCTGAATGAAACATAGAGAACTGATATTTTGAGCGGATCTTGACAATATAATCGTACGCATTTTGGCGACATAGTATCATATAACTGATTATCGGCACAAGCCTAACAGGCAGATATCGTGTAGGAGATCAGACAAATCATTTTCTGTCATGTAAAGTGCTGGACACCAAACACACCGTCTttattgttcacacacacacacacacacactgaattctCGTCTGTACACAGTGTCTTTTGTGGTGCGAACCTGTTCCTAATGGCAGCTGTAATAGTCAGTTAGCAGCTAATCTCTTGTGGCTTTATCGTGGGATTGGTCAGTGGTTTTAAAGTGACGTGGCCAATCAGAGCGCTCGATACATCAGCAGGTGTGCAAACATATTGCAAAATATTGTACtagacatttaaaatgtatgtaacgTATTATTCGAAAGAGATTTTCACGTGAGTTTTTAAAAGTTGTATTTCTACATGAGTTTGTGAAGATAATGTTCTATACAAGTTAAATTGTCTCACCAGTAATATTATTagaaatttataattttatgataCTGTTTCTACTATTAGAGCTTTATTTGGAGTGTCCTGTAGTTTTTATTGTGGGAGATTCACTATGTAGCTATCAGTGTATTTTatcagagagaaaataaaaacctgaagTGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577282.1 True 2187 lncRNA 0.41 2 15101039 15103414

Neighbor

gene id symbol gene type direction distance location
LOC113537365 ugp2a,LOC108258649,LOC108438596,LOC107757023 coding upstream 43818 15044012 ~ 15057221 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding upstream 57668 15035260 ~ 15043371 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding upstream 86579 15005828 ~ 15014460 (+)
LOC113537589 NA coding upstream 148861 14945645 ~ 14952178 (+)
LOC117596107 c26h1orf100 coding upstream 160438 14938005 ~ 14940601 (+)
si:ch211-133l11.10 NA coding downstream 55033 15158447 ~ 15162364 (+)
kif16ba kif16b,LOC107757030 coding downstream 107223 15210637 ~ 15237040 (+)
esf1 esf1,LOC107579043 coding downstream 171517 15274931 ~ 15284732 (+)
trnaq-cug_18 NA coding downstream 245840 15349254 ~ 15349325 (+)
psen2 psen2,LOC108258586 coding downstream 336474 15439888 ~ 15453548 (+)
G376287 NA non-coding upstream 98123 15002707 ~ 15002916 (+)
G376273 NA non-coding upstream 123061 14977773 ~ 14977978 (+)
G376242 NA non-coding upstream 184596 14910725 ~ 14916443 (+)
G376245 NA non-coding upstream 227538 14873223 ~ 14873501 (+)
G376202 NA non-coding upstream 234147 14805718 ~ 14866892 (+)
G376393 NA non-coding downstream 14056 15117470 ~ 15117890 (+)
G376409 NA non-coding downstream 45045 15148459 ~ 15148666 (+)
G376412 NA non-coding downstream 51840 15155254 ~ 15155481 (+)
G376405 LOC100194557 non-coding downstream 81095 15184509 ~ 15185982 (+)
G376455 NA non-coding downstream 225568 15328982 ~ 15385509 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other upstream 1134 15079687 ~ 15099905 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 740435 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 1058425 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 1079908 14016523 ~ 14021131 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 2974844 12109571 ~ 12126195 (+)
smdt1b NA other downstream 11053 15114467 ~ 15116878 (+)
jag1a jag1 other downstream 262385 15365799 ~ 15400404 (+)
G376467 NA other downstream 317985 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 387632 15491046 ~ 15492575 (+)
LOC113537700 NA other downstream 628248 15731662 ~ 15756178 (+)

Expression


Co-expression Network