esf1 (esf1,LOC107579043)


Basic Information

Item Value
gene id esf1
gene name esf1,LOC107579043
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15274931 ~ 15284732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300180.1
TGAGTCTTCTTGCTTGCCGTAGAAAATGGGGCGTGGCTTAGGGGGATAGCGGAAGTAGTTGGTGCATCACGGGAAAACACGTGTATAGCGAGGAATCGTGCGTGATGTATAAATATTGAGTCGGTTTGTGTCTGTAAACAAAGCGTCATCATGTCGTCTAAGAAAGAGCTGAGCGCTGACGAGCGCTTCGCCCGCGTCAAGAAGGACCCCCGCTTCTGGGAGATGCCGGACGTGGAGCAGAAAGTGCGCATCGACAAGCGCTTCCAGTCCATGTTCCACGACGAGCGCTTCAAGCTGAAGTACACGGTGGACAAACGCGGCCGTCCCGTCAACCACACGTCCACCGAGGACCTGAAACGCTTCTACAAACTGTCCGACTCGGAGCAGAGCGACACTGACGCCgagcaggaggagaagaagaagaagaagaagaaagtaaaagcaaaagcaaaggAGGATGAGCTtcaggatgaagaggaggagcttGAAAAGGGGAGGAaagatgatgatgaacttgaggaggaggatgatgaagaagaatATAGCGACACTGACAAAGGAGTGGGTCTctctgctgatgatgatgaggatgatgatgatgttgatgatgaagatgctgaggaagaagaagaaggacgtgatgatgaagatgctgaggaagatgaggaagaagatgatgaagacGAGGGTGAGTCGGAGGACGACAGTGACAGCGGTCCTGATCTGGCCCGAGGAAAAGGCAACATCGAGACGAGCTCTGAGgacgaggatgaggaggaggaggatgaggtgGAGGACTTCCTGCGtcatgaggaagaggagattGAACACGACTGGGGGGAGATGTGGAAGGACGCGCCACGCACTGAGCAGgtcagtTGCAGGTTAGCGGTGTGTAACATGAACTGGGACCGGCTCAAAGCTAAAGACCTGCTGGCTCTGTTCAGCTCCTTCAAACCTAAAGGAGGAGTGGTGCTGTCCGTCACGatctACCCCTCAGAGTTCGGTAAAGAGAGGCTGAAGGCAGAGCAGACTCAGGGCCCTTTGGAGCTCACCAGCCTCCCAGACGACCCAGACGCAGACACTGAGGAAcagagGATCTATAGGGAGAAGGTGCGAGATTATCAGTTTAAGCGTCTGCGTTATTACTACGCCGTGGTAGAGTGCGACTCGCCCGAAACCGCCGCCAAAATCTACGAGGAGTGCGACGGCTTCGAGTACGAGAGCAGCTGCTCTACGCTGGACCTGCGGTTCATCCCTGACGACATGATGTTTGAAGATGAGCCGAAAGACACAGCGACGGACGTGGATTTGTCCACCTACAAACCCAAACTGTTCACCTCCACCGCCACCACTACAGCTAAGGTGGAGTTAACGTGGGACGAGACGGATCATGATCGCATCACCACCCTCAGCAAGAATTTCAACAAGGACGAGCTGCTGAACATGGACTTCCAGGCCTACCTCGCTTCCTCcagtgaggatgaggatgatgaggtcGAGGCAGAAGAGGTGAAGCCggtggagtgtgtgatggaggagaAGAAAGGAGGGAAGAAGGGCAAGAAGGAGGAAGAGCAGATCAGTAAATACCGCCAGCTCCTGCAGAGCATCCAGGATAAAGAGAGGAAGGAGAAGGACAAGGACATGGAGATGGAGATCACGTGGGTCCCAGGGTTGAAGGAGAGCGCGGAGAAACTggtgaagaagaagatggagggAAAAGACAAAATGACTCCGTGGGAGGAGTTTCTggagaagaaaaaggagaagaagaatgagaagaggaaaggaaagaagGAAGCCGAGGCCCAGGATGAGGCTGCTATCAGTGATGATGAACTTCCTCCTGACGTTGACCTCAATGACCCCTTCTTCTCTGAGGAGCTGGGAGGATCTACTGGGACGGCCCAGAAAGTCAAGAAAtcgaagaaaaacaaaaagggggAGGAGCAACTAacagcagaggaggaggcggagCTAGAGAAACAGAAGgCTGAAATGGCTCTCCTGATGGACGACGATGAAGACGAGAAGCACCGGCATTTTAATTACGATCAGATCGTGGAGCAGCAGAACCTGagcaagaagaagaggaagaagctcCTGAAGAACAACACGCTGCTGGAGGAGGACAACTTCAAGGTGGACTTGGAGGACCCGCGTTTCCAGGCCATGTTCACGTCCCACCTGTACAACCTGGACCCCTCAGACCCGGCCTACAAGAAGACCAGAGGTACTCAGAGCATCCTGGAGGAGAAGCAGAAACGGCGGGAGGAGCAGCAGCGCAGCCAGCAGGAGGCGCTCCAGAGCCAGGAGAAACCCAGCAAGAAaccagaggagaaagagagcacAGATGGTGGAGAGACGACAACAGATTCGACAACATCGGTGGCCCCGAGTAAAATCCTGGACCAGAGTCTATCGTTGCTCATCAAGTCTGTGAAGAACAAGACTGCGCAGTTTCACGCCCGCAAGAAACAGAGGACGAAATAGAGCCGGAACattgtttgtgtgggttttagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaactgaACTCATTTATACAATTACTGATGTACAGTTGTTTTGTAAAGGAGACTTTATGATTTAACAAAACTATCTACTAAAACATTAAAGTCATCTCAGCTCTAAAA

Function

symbol description
esf1 Predicted to enable RNA binding activity. Acts upstream of or within neural crest cell development; pharyngeal system development; and rRNA processing. Predicted to be located in nucleolus. Is expressed in several structures, including digestive system; head; immature eye; midbrain neural rod; and pectoral fin bud. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog).

NR:

description
ESF1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300180.1 True 2675 mRNA 0.52 15 15274931 15284732

Neighbor

gene id symbol gene type direction distance location
kif16ba kif16b,LOC107757030 coding upstream 37891 15210637 ~ 15237040 (+)
si:ch211-133l11.10 NA coding upstream 112567 15158447 ~ 15162364 (+)
LOC113537365 ugp2a,LOC108258649,LOC108438596,LOC107757023 coding upstream 217710 15044012 ~ 15057221 (+)
mdh1aa mdh1aa,LOC108258652,LOC107729383,LOC107675721,LOC107382285,LOC107583187 coding upstream 231560 15035260 ~ 15043371 (+)
otx2a otx1,otx1a,LOC108438611,LOC100708857 coding upstream 260471 15005828 ~ 15014460 (+)
trnaq-cug_18 NA coding downstream 64522 15349254 ~ 15349325 (+)
psen2 psen2,LOC108258586 coding downstream 155156 15439888 ~ 15453548 (+)
LOC113537703 LOC108258583,LOC108443332,LOC107598499,LOC102228635 coding downstream 172197 15456929 ~ 15473803 (+)
tsc2 tsc2 coding downstream 217177 15501909 ~ 15549245 (+)
LOC113537529 LOC108258989,LOC107709633 coding downstream 368789 15653521 ~ 15676223 (+)
G376405 LOC100194557 non-coding upstream 88949 15184509 ~ 15185982 (+)
G376412 NA non-coding upstream 119450 15155254 ~ 15155481 (+)
G376409 NA non-coding upstream 126265 15148459 ~ 15148666 (+)
G376393 NA non-coding upstream 157041 15117470 ~ 15117890 (+)
LOC113537537 NA non-coding upstream 171517 15101039 ~ 15103414 (+)
G376455 NA non-coding downstream 44250 15328982 ~ 15385509 (+)
G376474 NA non-coding downstream 169149 15453881 ~ 15454930 (+)
G376497 NA non-coding downstream 235100 15519832 ~ 15520147 (+)
G376499 NA non-coding downstream 237360 15522092 ~ 15522635 (+)
G376522 NA non-coding downstream 290098 15574830 ~ 15575485 (+)
smdt1b NA other upstream 158053 15114467 ~ 15116878 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other upstream 175026 15079687 ~ 15099905 (+)
LOC113537358 LOC108258898,LOC108258899 other upstream 914327 14358742 ~ 14360604 (+)
G375711 tpt1,LOC107734570,LOC107598740 other upstream 1232317 14023250 ~ 14042614 (+)
gpalpp1 gpalpp1 other upstream 1253800 14016523 ~ 14021131 (+)
jag1a jag1 other downstream 81067 15365799 ~ 15400404 (+)
G376467 NA other downstream 136667 15421399 ~ 15424798 (+)
G376488 slc9a3r2 other downstream 206314 15491046 ~ 15492575 (+)
LOC113537700 NA other downstream 446930 15731662 ~ 15756178 (+)
LOC113537447 NA other downstream 473251 15757983 ~ 15765055 (+)

Expression


Co-expression Network