RNA id: XR_004577362.1


Basic Information

Item Value
RNA id XR_004577362.1
length 1936
RNA type misc_RNA
GC content 0.45
exon number 8
gene id gpalpp1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14016523 ~ 14021131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGAAATTGTACTTCCGGACTTTTATTCTGAAACCGGAAGTTTGCATTTTTATGTGCGCTAGTAATAAATTcctagcttattattattattatatttgaatgaatttgtaGCCATGTCGAGTGATAATATAATCGGACCTGCTTTACCACCGGGGTTACGAGCGAGCAGAAGTGATGAATCAGATGAAGACAACACGATCATAGGCCCAGCTCTGCCCCCGCTTTATAAACGCACAGAGTCCTCCAGTTCCTCCAGTGATCAGGAACAGGTGGTGTTCAAGAGAGCCAAATACTCAGGATCAGGGGACAGTCTGCCTTCTAAGAAGAGAGCAGCAGCTGGgaggtgtgatgatgatgatgatgatggtgatgcaGATGCAGTGGATGAGGATGATGGCTTCTTCGGTCCAGCTCTACCTCCAGGATACCAAAAGCAAGACAGTTCACCTGAAAGACCCCCAGTCCTTGGACCCGCGCTGCCTCCAGGCTTTAAAAGGAAGCATCACGATgacgaggatgaggaagaggatgaaggAAGAGGGGTTCTAGGACCGGCACTTCCTCCTGGATACAAAGCGGAGTCTTCCAGCAGTGAGGGAGAAAACGAGGACGTCATCGGGCCCATGCCGTCCAGAGGGGAAAGTCAGAGTAACGTGGCACTGGACTTTGAAAGAAGAGCACAGAGAATGAAGGACAGATTACTGGGGCGAGATGATGAGTCTGAGAAGCCGCAGAGGGAGAGCTGGATGACGGAGCTGCCTCCTGAGCTGCAGCATGTCGGACTGGAAGCACGAACCTTTAAGAAGAGATCAGGACCCGAGAACAAGGACCGCTCCATCTGGACCGACACGCCCGCCGACCGAGAACGCAAAGCCAGGgAGCGACAAGAAGCGaaagagagaggtgagacagtCAAAGATGACGGCCCTCGTCTCTCCAAGAAAGATCTGGAAATGGCAgaaaaagtgtccaaatacaacgagtccaagagaggcGAGTCGCTCCTGAGCATGCACGCCAAGAAAATGAAGAGGAAAGCCGAGGAGGATTCCAAAAAGCCGGCGGAGAGGAGGCCCTTCGACCGAGACGCCGACCTGCAGGTCAATCGCTTCGACGAGGCGCAGAAAAAAGCCCTGCTGAAGAAGAGTCAAGAGCTCAACACGCGCTTCTCACACAGCAAGGATCGAATGTTCCTCTGAGGAACGGGAAATGTTGTTAAAAACATCAGCCAAGCATCTCAATAATTGCTTGACTGAAAGCACGGACtcctttaaagatttctggccctgaaatgaGCTCCGCCACCAAGGACTTCTCCATAAAAGGCAACACAATGAATATAAAGTTTTAACAGGGCTTAGGGTTGGGTGAAGAAAAGTGAAAGGCTTatacattgttttcattttaatcgCAGTTTAGTGGGTTGTAAAAGTTACAAACGGCTCCTTTAAAGACAGCAATGTACTGGAAATCTGAGCATCGTGCTGCAGCATTGGTTATTTTTAGGGTAGTTTGAACAAGTGAACCAAAATGAcgatcatttcaaaataaattgaACGGGTTATCTTGCGAAGTGATAAATCACGTAAGTGTGTAAGcttgtctgatttttaaatattaaatcccATTCAGTCATCTCTGGGTTTTTTGTAAACTAAGCAGTGCATCAGCAGGGTTTAAAACATTGAAAAATAGTGTAGAAAGTGCACAGGAgcagaaaaaatatattctttGTTACATTAGTATGATACAGGACTCTTTAGTATGTACAGGAATCTTTACTTTGTtgtttgggttgtttttttgttttttttttttaaataagaggatGTGATGTCAgatattattttgtgtgttttttttctgtgctgtatTTTCACGCTTTTGTTAAGATgagataaataaacatttcacagaggatttgaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444671 lncRNA upstream 219988 13702127 ~ 13796535 (+) True G375496
XR_004577349.1 lncRNA upstream 461923 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA upstream 461923 13548497 ~ 13554600 (+) True LOC117596173
TU444602 lncRNA upstream 538264 13476476 ~ 13478259 (+) True G375431
TU444590 lncRNA upstream 579466 13436647 ~ 13437057 (+) True G375422
TU444905 lncRNA downstream 19 14021150 ~ 14021535 (+) True G375710
TU444906 lncRNA downstream 15210 14036341 ~ 14042614 (+) False G375711
TU444909 lncRNA downstream 15210 14036341 ~ 14042614 (+) True G375711
TU444948 lncRNA downstream 118248 14139379 ~ 14141880 (+) True G375739
TU444983 lncRNA downstream 169767 14190898 ~ 14192300 (+) True G375771
XM_026932034.2 mRNA upstream 73600 13917963 ~ 13942923 (+) True klf12a
XM_026931640.2 mRNA upstream 181532 13832326 ~ 13834991 (+) True kctd12.2
XM_026931701.2 mRNA upstream 204157 13802400 ~ 13812366 (+) True slc5a7a
XM_026932042.2 mRNA upstream 222189 13788562 ~ 13794334 (+) True arl6
XM_026932073.2 mRNA upstream 244673 13637632 ~ 13771850 (+) True epha6
XM_026932165.2 mRNA downstream 2358 14023489 ~ 14033839 (+) True gtf2f2a
XM_026932166.2 mRNA downstream 2361 14023492 ~ 14033839 (+) False gtf2f2a
XM_026932360.2 mRNA downstream 22828 14043959 ~ 14060786 (+) True LOC113537730
XM_026932359.2 mRNA downstream 22828 14043959 ~ 14060786 (+) False LOC113537730
XM_034299978.1 mRNA downstream 53955 14075086 ~ 14084654 (+) False LOC113537316
TU442901 other upstream 3006903 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 4139970 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5862668 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 7297697 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8808792 5207595 ~ 5207731 (+) True LOC113537771
TU444908 other downstream 2119 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1058609 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1093341 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1328123 15349254 ~ 15349325 (+) True trnaq-cug_18
TU445810 other downstream 1400268 15421399 ~ 15424798 (+) True G376467

Expression Profile