RNA id: TU444906


Basic Information

Item Value
RNA id TU444906
length 3777
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G375711
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14023250 ~ 14042614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCAGTGTTCCTTCACGGCAATACCTGAAGAGTTAAATTCTGTGGAAGgcaagttttaaataaataaatcttaactCTCTACACAAGACACCTTTAGCCAGCAgcttgactttatttatttcacaaataGTTCCAAGAAATCCTATACAATCCCGTGATTTGAAGGAGATgggagggggaggagggggtGGGAATAATACCTGTACAACTGCCGTCTGAGCGCCGACATGCACACAGCAAAACCAATTCCCAGGCAGTCAAActtgatgaaattaaaaaaataaaccctaAAGTGAGCTGTATCATGTCTTCTTCCTCTGACAATGCAAAGCTCTCTGCAATTTGATCCAGCTCACTAAAATACTGTTCACCCCATGAGCTGGTGTGTGGAGGGGCTTTGAGTTCTTCTGGATGGACACTGATTATAGGAATCGAAGCGGTGGCcgtagaggaggaggaggaggaggtttaAAAGAGCTTCCGGTCCTGATCCTGATGGAGACGAGTGGAATGAGTGATCTGATCCAAAAGCTTTTACGGCCATCCGCTGATGAGAAGCAGTCTGGGACACGAGCAGGGTAGTTTACTgaagagagaacacacacacacgcagattAGACAAGATTCCGACCCAAACTTCACAAATTACCAAATTAACCACCACATTTACACCAATAGCTAAGTGTCATACATTTTGAAGAAGTCGTGCTACCTTACGAAACTCACAATACGCAAAACTGTCCCTCTTCATGAATATTCACTAATGCAACTTCACTAGAGTTCATTCAAGAACCCGACGTTCATGCTAGCAAGCGATAAGCCGTTTGTATGTCTCATGCGTGCATACACATCAAGAtcagaaacagcagcagctacacacacacagtgtaaaactgCTAGTCTGGTTTACATGCTTGGCTACGTGCTAGCTTCGCTGGCACATTAGCTACTACCTATGTATGTCCTTCCAAGCATTATATTTTTTCGTCATGTCTACACATTTAACGAGATAACATGAAGTATATGAACAGCCGCTTTGCTGCTATCTAGCGTGAATGTAGAAtaagtatttagtatttatagACAGTGAGAAAAATACATGCCATCTGAAAAGAGATAGAAGGAAATCCATTTTACAAGTGTccttattttaaacaaatctgaAGACTGAACTCTCTGAACTATGCTTCTTAAACTGCTGTTAAATGGACATGGATGAAGAAGGGTGAATGTTTGGAGGGAAAATGGAGGACAGACGTGTTCGTCCAACACCATACACTAACAGAAATGTTATGAccttatgtttaatttatgcgAGCGTGACACCCTTCCCTGTCATCTCAATGATGCAGGGtattaaacattaacacagtCAGACTAACATGGGCAGCCTGTTCTCCTCTCTTCAATCTGCTTCTGCCATTTCATAGACAGCTAGAAAGCGCGAGGAAGATTACTGTCGCATCCCAGTGCAAACCCAGAGGCCACTGATAACGGCAGCAGGTCTATCAGTAGATGCCAGAAATGAGGCACCGCCCATTTTTATTCAAGTCCCACCACCCCAACTCCCATTACTATCCAGAGCTATACAAGCCTAAACCCTGAAGATATGTTTAAGGCAAGATACTACAGAAAGAGATGTCAATTTTTCAGATTTGTATCCATAATttatgatggattttttttgcgGATTCTAGAAAAATAGCATAACGGTACAAGTTTTAAACCAGTAATATGATAACCTAAACTATTTTACTGATTGAATGCTAAACGTTCCAACAAACTGTTCagtaaaaatcttttttctttatctgaAGTGTTTTGATTCCAACATGAAGACTAGATTTTAGACTACATTTTGGCAATATAAAATTGACACATTTAATTAGATGAAACCTCGTTTGTATAAACCCAAAGAATTTGCCATGTTAAGTATTCCTACGCAAGCATGAACGCTGACGAGCTGTCTTTAGCAGTCACACCCAGACCGTAGACACTTACGCATTTCTCAATCTCAAGACCGTCTTTGAAGAAGAGCATGAACGGTGTCACTCCGTCCTCACGGAAGTCGAGCAGACCAATTGAGCCATCGGGGTTCATGGATTCACCTGTGAAAAACTGCACCAAAGATGATTTTGGTCAGAGGGAGAACTACAAAAGCAGAGCTTTTACTTTCAGGGTTCAGTCGTACTCAGGATATGATTTAGTTTCATTGGTCGTGACCTCCAAAGGTGTCCTAAGATCGTCATCACCGTACGTTTATCGAGATCATTCGAGGCCCTCTcttgaggaacacacacacatatgcagatAGTTACCTGGAAGTTCTTGATGTTgcctaggattttcttgacctCAGCTGGAGCATTAGCCATGAAGGGCTCTACCCGTTCAGGAGACGTTTCCTGCAGTTTGGCCTTCACCCTGTCGCAGAGAACAAGCACGTATTCAGCGTACAGTGAGGCACACGGTTTCACCAACAAGGGATTAAATTTAGTACCATCAAAAGAAGTCATGTTGTCCCCAATTCAATCTCCTAAGTCACAGACAGAACATGAAGAAAGCGCAGGGACGGTTTATTTAGCATCTATAATTTAAAACCCACTCACTCACAAGAGAAGTAACCGGGCTGTCAACAGATGCCAAaggggggaggaaaaaaaaaaataataataataataaaaaaccaaAGTATCACATCAACAACGACTGGTTAGTctggaaaagaaattaaaactaAAGCCAAGGagcagcatttttcttttcaggatTAATCTGTTGACAGGCTAAACACCCTGCGAGCAAATACAGTACACGTTTATAAATAAGATTCCTTTGTTCATGGTTAAGACTCAACAatttaaagtgttttgtttccACTCTCGCCTAAAGCCGTgtactctgaacagatgagatgtcCGTTTTGAACTTTAATTGAAGAATAAACGCACACGTGTCCGTCGAGTCGTCTTTAAACgacatgttttctgtttttaccATTATTCAGACCAGAGAGGCTAAACAAGATCCTAGAAAATGCTTTGAAAACATTTCCATTGTTCAGTGAGCTgcctttaaacaaacaaaaactagtTCCTGAACTACCAAATGCTCTGTGCGAGTCATTTAAATTCCTTTAAGCTTGagggtggagtgtgtgttcatcttGTTTATCTGCTACCAAGTTTATAAAGtcattttgaaaaacaaaaatttcaTGCTACTTCCATGAAAAACAGAATGTCAATATATTACATCAATATTGATAAATTAGATGtgctttttaactttattgcAGCTCAAGTTCACAGTTTAAAACCTTCGTTCTTGTTCCTTTCAAGTGTTTCTAGTTGTTAAAAGCCATCAGACAAAAAAAGGGCCCCCTGACTCCACCATCACATCACTGCGTACGCTTTGAGTAAACTCACGTCTTCATGTAGTCCTTGATGTAGGCTGTGTAAGACTTCTTGTCGTAGCTGGTTTCCTGAAGCTTGTGGTTGAGGACAATGTCGACGCCAGAGACCATTGTCGACTCACAGCCTTCGTCCAGGACCTCAGCGGATGCGTTGCCACCGATCAGCGAATCGTCGATCTCTCCCTCTGATCTGCTGATCATCTTCCCTCGACTTCGATCATCATTCCGTTCTCCGACTCCTTGATTTTGTAGATGTCCGAGAACATCTCATCTCGGTGATGATGTCCTTGTAGATGATCATTTTGTCGGATTGTGGAGCGGTGTTTCAGGAGGCGCTGGCTCTGACTGCAGCCCGGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444905 lncRNA upstream 14806 14021150 ~ 14021535 (+) True G375710
TU444671 lncRNA upstream 239806 13702127 ~ 13796535 (+) True G375496
XR_004577349.1 lncRNA upstream 481741 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA upstream 481741 13548497 ~ 13554600 (+) True LOC117596173
TU444602 lncRNA upstream 558082 13476476 ~ 13478259 (+) True G375431
TU444948 lncRNA downstream 96765 14139379 ~ 14141880 (+) True G375739
TU444983 lncRNA downstream 148284 14190898 ~ 14192300 (+) True G375771
TU444987 lncRNA downstream 161061 14203675 ~ 14204359 (+) True G375774
XR_004577348.1 lncRNA downstream 205073 14247687 ~ 14267611 (+) True LOC113537225
XR_004577353.1 lncRNA downstream 284755 14327369 ~ 14328701 (+) True LOC117596176
XM_026932165.2 mRNA upstream 2502 14023489 ~ 14033839 (+) True gtf2f2a
XM_026932166.2 mRNA upstream 2502 14023492 ~ 14033839 (+) False gtf2f2a
XM_026931619.2 mRNA upstream 15210 14016523 ~ 14021131 (+) True gpalpp1
XM_026932034.2 mRNA upstream 93418 13917963 ~ 13942923 (+) True klf12a
XM_026931640.2 mRNA upstream 201350 13832326 ~ 13834991 (+) True kctd12.2
XM_026932360.2 mRNA downstream 1345 14043959 ~ 14060786 (+) True LOC113537730
XM_026932359.2 mRNA downstream 1345 14043959 ~ 14060786 (+) False LOC113537730
XM_034299978.1 mRNA downstream 32472 14075086 ~ 14084654 (+) False LOC113537316
XM_034299977.1 mRNA downstream 32473 14075087 ~ 14081803 (+) True LOC113537316
XM_026932238.2 mRNA downstream 78424 14121038 ~ 14127293 (+) False LOC113537635
XR_004577362.1 other upstream 15210 14016523 ~ 14021131 (+) False gpalpp1
TU442901 other upstream 3026721 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 4159788 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5882486 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 7317515 6718694 ~ 6718826 (+) True LOC113537770
TU445701 other downstream 1037126 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1071858 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1306640 15349254 ~ 15349325 (+) True trnaq-cug_18
TU445810 other downstream 1378785 15421399 ~ 15424798 (+) True G376467
TU445848 other downstream 1448432 15491046 ~ 15492518 (+) False G376488

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU89148 True 3560 lncRNA 0.40 3 CM030128.1 19218317 ~ 19222919 (+)
tiger barb (Puntius tetrazona) TU89148 True 509 lncRNA 0.57 3 NC_056706.1 1908528 ~ 1911167 (+)