Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577349.1 |
| length | 725 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117596173 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 13534288 ~ 13554600 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU444602 | lncRNA | upstream | 56029 | 13476476 ~ 13478259 (+) | True | G375431 |
| TU444590 | lncRNA | upstream | 97231 | 13436647 ~ 13437057 (+) | True | G375422 |
| TU444391 | lncRNA | upstream | 211419 | 13321273 ~ 13322869 (+) | True | G375270 |
| XR_004577343.1 | lncRNA | upstream | 419132 | 13110314 ~ 13115156 (+) | True | LOC117596171 |
| TU444368 | lncRNA | upstream | 439867 | 13094222 ~ 13094421 (+) | True | G375249 |
| TU444671 | lncRNA | downstream | 147527 | 13702127 ~ 13796535 (+) | True | G375496 |
| TU444905 | lncRNA | downstream | 466550 | 14021150 ~ 14021535 (+) | True | G375710 |
| TU444906 | lncRNA | downstream | 481741 | 14036341 ~ 14042614 (+) | False | G375711 |
| TU444909 | lncRNA | downstream | 481741 | 14036341 ~ 14042614 (+) | True | G375711 |
| TU444948 | lncRNA | downstream | 584779 | 14139379 ~ 14141880 (+) | True | G375739 |
| XM_026931693.2 | mRNA | upstream | 16518 | 13508073 ~ 13517770 (+) | True | nsun3 |
| XM_026932184.2 | mRNA | upstream | 31797 | 13490332 ~ 13502491 (+) | True | arl13b |
| XM_026932186.2 | mRNA | upstream | 31797 | 13490332 ~ 13502491 (+) | False | arl13b |
| XM_026932187.2 | mRNA | upstream | 31797 | 13490332 ~ 13502491 (+) | False | arl13b |
| XM_026932188.2 | mRNA | upstream | 31797 | 13490332 ~ 13502491 (+) | False | arl13b |
| XM_026932073.2 | mRNA | downstream | 83032 | 13637632 ~ 13771850 (+) | True | epha6 |
| XM_026932042.2 | mRNA | downstream | 233962 | 13788562 ~ 13794334 (+) | True | arl6 |
| XM_026931701.2 | mRNA | downstream | 247800 | 13802400 ~ 13812366 (+) | True | slc5a7a |
| XM_026931640.2 | mRNA | downstream | 277726 | 13832326 ~ 13834991 (+) | True | kctd12.2 |
| XM_026932034.2 | mRNA | downstream | 363363 | 13917963 ~ 13942923 (+) | True | klf12a |
| TU442901 | other | upstream | 2524668 | 11006008 ~ 11009620 (+) | True | G373955 |
| TU442162 | other | upstream | 3657735 | 9839096 ~ 9876553 (+) | True | LOC117596102 |
| TU441073 | other | upstream | 5380433 | 8149960 ~ 8153855 (+) | True | G372351 |
| XR_003403794.1 | other | upstream | 6815462 | 6718694 ~ 6718826 (+) | True | LOC113537770 |
| XR_003403795.1 | other | upstream | 8326557 | 5207595 ~ 5207731 (+) | True | LOC113537771 |
| XR_004577362.1 | other | downstream | 461923 | 14016523 ~ 14021131 (+) | False | gpalpp1 |
| TU444908 | other | downstream | 468650 | 14023250 ~ 14042614 (+) | False | G375711 |
| TU445701 | other | downstream | 1525140 | 15079740 ~ 15091481 (+) | False | rfx1b |
| TU445724 | other | downstream | 1559872 | 15114472 ~ 15116856 (+) | False | smdt1b |
| trnaq-cug_18 | other | downstream | 1794654 | 15349254 ~ 15349325 (+) | True | trnaq-cug_18 |
