Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU444590 |
| length | 411 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G375422 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 13436647 ~ 13437057 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0019538 | protein metabolic process | biological_process |
| GO:0030163 | protein catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU444391 | lncRNA | upstream | 113778 | 13321273 ~ 13322869 (+) | True | G375270 |
| XR_004577343.1 | lncRNA | upstream | 321491 | 13110314 ~ 13115156 (+) | True | LOC117596171 |
| TU444368 | lncRNA | upstream | 342226 | 13094222 ~ 13094421 (+) | True | G375249 |
| TU444357 | lncRNA | upstream | 401145 | 13035210 ~ 13035502 (+) | True | G375238 |
| TU444228 | lncRNA | upstream | 694700 | 12741736 ~ 12741947 (+) | True | G375120 |
| TU444602 | lncRNA | downstream | 39419 | 13476476 ~ 13478259 (+) | True | G375431 |
| XR_004577349.1 | lncRNA | downstream | 97231 | 13534288 ~ 13554600 (+) | False | LOC117596173 |
| XR_004577350.1 | lncRNA | downstream | 111440 | 13548497 ~ 13554600 (+) | True | LOC117596173 |
| TU444671 | lncRNA | downstream | 265070 | 13702127 ~ 13796535 (+) | True | G375496 |
| TU444905 | lncRNA | downstream | 584093 | 14021150 ~ 14021535 (+) | True | G375710 |
| XM_026932376.2 | mRNA | upstream | 814 | 13428573 ~ 13435833 (+) | True | chmp2bb |
| XM_026932368.2 | mRNA | upstream | 41867 | 13353925 ~ 13394780 (+) | True | dhrsx |
| XM_026932366.2 | mRNA | upstream | 41867 | 13361642 ~ 13394780 (+) | False | dhrsx |
| XM_026932367.2 | mRNA | upstream | 41867 | 13361642 ~ 13394780 (+) | False | dhrsx |
| XM_026932116.2 | mRNA | upstream | 134531 | 13288826 ~ 13302116 (+) | True | mxra5a |
| XM_026932112.2 | mRNA | downstream | 17666 | 13454723 ~ 13476061 (+) | True | htr1fb |
| XM_034299889.1 | mRNA | downstream | 17666 | 13454723 ~ 13476061 (+) | False | htr1fb |
| XM_026932113.2 | mRNA | downstream | 17666 | 13454723 ~ 13476061 (+) | False | htr1fb |
| XM_026932040.2 | mRNA | downstream | 41765 | 13478822 ~ 13490069 (+) | True | znf654 |
| XM_034300094.1 | mRNA | downstream | 53274 | 13490331 ~ 13498432 (+) | False | arl13b |
| TU442901 | other | upstream | 2427027 | 11006008 ~ 11009620 (+) | True | G373955 |
| TU442162 | other | upstream | 3560094 | 9839096 ~ 9876553 (+) | True | LOC117596102 |
| TU441073 | other | upstream | 5282792 | 8149960 ~ 8153855 (+) | True | G372351 |
| XR_003403794.1 | other | upstream | 6717821 | 6718694 ~ 6718826 (+) | True | LOC113537770 |
| XR_003403795.1 | other | upstream | 8228916 | 5207595 ~ 5207731 (+) | True | LOC113537771 |
| XR_004577362.1 | other | downstream | 579466 | 14016523 ~ 14021131 (+) | False | gpalpp1 |
| TU444908 | other | downstream | 586193 | 14023250 ~ 14042614 (+) | False | G375711 |
| TU445701 | other | downstream | 1642683 | 15079740 ~ 15091481 (+) | False | rfx1b |
| TU445724 | other | downstream | 1677415 | 15114472 ~ 15116856 (+) | False | smdt1b |
| trnaq-cug_18 | other | downstream | 1912197 | 15349254 ~ 15349325 (+) | True | trnaq-cug_18 |
