RNA id: XM_026932366.2


Basic Information

Item Value
RNA id XM_026932366.2
length 2943
RNA type mRNA
GC content 0.44
exon number 7
gene id dhrsx
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13353925 ~ 13394780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAAACAGTGAGACACTCTCCGGACAGCGCTGTCAGAGTGCGCGATGTGGCGGCTGCTCGCCTTCATCCTGCCGGTTATCAGGCTTTATTTCATCGGTGTGAAAGTGCTCATCGACCAGCTGCTCCACAGATCCTTCGCTTTACCAGTTTTGCCCAGACAGAATGGGAGGGTTGCCATAGTGACGGGAGGAGCCAGAGGAATGGGCTATGAAACTTCTCGACACCTGGCGAGCCTGGGCACGCATGTGGTCATCGCTGgaaatgaggaggaggagggtcTCATTGCAGTGAAGAAAATCCAGAAGGAGAGCGGACACAGGAAAGTGGAGTTCATGTACCTGGACTTGGCCTCCTTGAAGTCCGTGCGACAGTTTGTGCAGAGATTTAAAGCCAGGGGTCTGCCTCTACACACTCTCGTCAATAACGCTGGTGTTATGCTGGTCCCAGAAAGGAAGACAGAGGACGGATTTGAGTTGCACTTTGGACTGAACTATTTGGGCCATTTCTTGTTGACCAACTTGCTGCTTGACGTGCTGAGAGATTCTGGGCAGAGTGGGAGGTACTCCCGAATCGTCACAGTGTCCTCAGCCACTCATTATGGAGGAAGACTTGACCTAAACGACCTGCAGGGCAGGTCGTGTTACTGTTCCCATGGTGCGTACTCTCAGAGTAAACTGGCCCTGGTGCTTTTCACCTATCACCTGCAGGAGCAGCTGTGGGCTCGAGGTGATCCAATAACGGCTAACGCTGTGGACCCTGGCATGGTGGACACGGACTTGTACCAGAACCTGTGCTCTCCTGCTCAGCTGGCCAAAAAACCTGTGGCCAAACTACTCTTCAGGACTCCGGCTGAAGGAGCGTCCACGGGCGTTTACGCAGCCACCACCTCTGAGCTGGAGGGGCTCGGTGGCCTGTACCTATACAACGGCCAGAAGAAGATCTCCTCAGCAAGCTCCTATGATAAACAGCTGCAGGAAAAGCTGTGGACCAAGAGCTGTGCGATGGTGGGTCTTCAGAAAGCCTGAAGAACCTTGAGGAACATCTGAACATCTTCCTGATGAGCATTTGAGTCATGATTACAATGACAAAGGTTCATTTGCTGGCAGTTTCATTTTGCACTTTGTCTCATACCTGGTATATTGCATTATAGAGGAAGAAGTTATTACTTCTTCCTTTGTAGCAATCCCTGGAGATTGATTCTTCTGTCTGAAGGTAAATATTTCtcaaaaaggacaaaaagtaTACCATTTCCAAGCCCAGTGTTGTGATTCTGCACTATGAGAACTTTTATAACATTAATGCTAAGAACCAGAATCAATGCAATAACAAGTTCTACTGATTTGCCAAGCTGCAAGCGGTGGCttttaaattactgtaaaaaacaaaacaaaacaaaacaaaaacaatcaacttGACCTGTGGATTATGGTCATGTActgcctcaaaaaaaaaaatgtccaaaatggACAACGctctgcctctctgttttcatttcctcctgcttcaggggaaaaaatctcGTCTTGTGCTGTCTTCAGTGAATTCCCCTGTTCCTGTGTGGTCCTTTTCTCGCTGCTAAATCAAAAATGCTCTAACACTTAATGATGGAAACCAACCGAGTGCAGTTGAAAACACTGCAGATGCACAGCCAGAAGGCTACAGCGGGGGAAACAGTTATTTgataaagcttcatttttcagttttccaCCCTGAAATTCTGAGTAGCGTCTCGGTAGCTTTTCCCAATGCAGGTACTTCACCTGGGCCTACCTACTCTTTCCTGctaggattttatttttcttttgttattattattttgtctatcTTTGGTGACTGTGATGTGTTAGAAAAATGTGATTGTAGTGTCTGAGCAATCTACTAACAGCTGTAGTGTtctgtttctccttttttttcaccatttagtcGTTCTCTTATCATGGAACTGTTGAGAGGAAATGTTTGAATTTTATAAATTGTGAATACGGTATTTGGAGTGTTTCGATACTAGACGTAAACACTCAAACGTGTCCTGAATAATACTTTGAATCCAGTCGGCCAAGTCTCATTGTGAATTCACAGCGCTTGACTAAGTATTTTGGATAAAAGAAAGATGAGTGAAGCAAtggaaagaaataagaaatgaatagAAAGGACTTCTAGTTTTCTAGCTCCCTTGTGTAAAACTATGAGTGACTGGAATGTGTGAACTCCTCCAAGTGCTGCTTCGCCCTGCAGAAAATTTCACTTGTATCCATGTCAAATGTTACTGTGTTAAGTGTACGTGTCTGTATTTATGTGTAAGTGACCAATGAGTTGCCCAAACATGTGCTCAGAATGCTATAACAGTACGCTTCCCAGTATTTCACTGTTCCTGTGAACTCCATTCAAACTTCCCCTTCTATTTTAACCAATCAAGAGCCGGGTTCTCTTTGATCCCAGCGTATTGTATGATCTGTGTATGCTAATCAGTCGGAGCTATTTGGCTTTCATCCCAATCGCAAGGGTAATtacagctgtaattgcagcccTAGAGTGATTGCTTCCTTGCTCAGCTACCAGTCAGTTTAATTAGATAGCGATAAGAAGGTAAGGAATAAATCTGTAACAATATTTAGGATTGATCAGAAACGCAGCTCAGAAGGAGATAATTGCACACACGCTCGTGATTATTAAAGGCAACCACTGCTCACTGTGAACAGCGCCATTATGGTTTGATCGTCATTCTCAATCTCTTAACACTCGACACAAGTGGAGCGTTCTGTCGAGTGATGTGGAAGTGTCATCGTCTCTTAaacagggaggaaaaaaaaagaagaaaacgcATTTCCTTTGGTTGAAATTTCAAAAGAAACCTTGAAATCAATGTTACTTCAGCTGTCGTGTCTTTATTTGATGTGTGATGCCGGTGAGTGGggaattaaaatttatttttgtggaatgA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444391 lncRNA upstream 38773 13321273 ~ 13322869 (+) True G375270
XR_004577343.1 lncRNA upstream 246486 13110314 ~ 13115156 (+) True LOC117596171
TU444368 lncRNA upstream 267221 13094222 ~ 13094421 (+) True G375249
TU444357 lncRNA upstream 326140 13035210 ~ 13035502 (+) True G375238
TU444228 lncRNA upstream 619695 12741736 ~ 12741947 (+) True G375120
TU444590 lncRNA downstream 41867 13436647 ~ 13437057 (+) True G375422
TU444602 lncRNA downstream 81696 13476476 ~ 13478259 (+) True G375431
XR_004577349.1 lncRNA downstream 139508 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA downstream 153717 13548497 ~ 13554600 (+) True LOC117596173
TU444671 lncRNA downstream 307347 13702127 ~ 13796535 (+) True G375496
XM_026932116.2 mRNA upstream 59526 13288826 ~ 13302116 (+) True mxra5a
XM_026932117.2 mRNA upstream 59526 13288826 ~ 13302116 (+) False mxra5a
XM_026932122.2 mRNA upstream 91225 13233884 ~ 13270417 (+) True prkx
XM_026932268.2 mRNA upstream 373268 12909822 ~ 12988374 (+) False nlgn4xa
XM_026932376.2 mRNA downstream 33793 13428573 ~ 13435833 (+) True chmp2bb
XM_026932112.2 mRNA downstream 59943 13454723 ~ 13476061 (+) True htr1fb
XM_034299889.1 mRNA downstream 59943 13454723 ~ 13476061 (+) False htr1fb
XM_026932113.2 mRNA downstream 59943 13454723 ~ 13476061 (+) False htr1fb
XM_026932040.2 mRNA downstream 84042 13478822 ~ 13490069 (+) True znf654
TU442901 other upstream 2352022 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3485089 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5207787 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6642816 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8153911 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 621743 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 628470 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1684960 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1719692 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1954474 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile