RNA id: XM_026932112.2


Basic Information

Item Value
RNA id XM_026932112.2
length 1930
RNA type mRNA
GC content 0.49
exon number 3
gene id htr1fb
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13454723 ~ 13476061 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGTGTCGAGTCCGCGCGCTCACGGAATGCTCACATCTCGCGCGCCCACGGTGGAGAcgccattctctctctctctctctctctctctctctctctctctctctctctctctctctctctgacagaaCCGAGCTGCTGACAGGAATTCCTCAGACAGACCGAAATCACaagaacgTTTTTCATCGCTCCAGGACAGGTCCAGACACATGGAGAATCGATGCTAAGgcacattgaagctgttctggaggCTTGTAGTGGCACGACAACTTACTAAGACACtGTTCCCCCAGTTAAAATTCATTCTAAACCATGGATCCGGTAAACTGCTCCTCAATGGAGCTGTCTGATGATGTGGATACTGGGACCAGTGGCAGTAAAATTGCCCTCTGCCTGATGCTCTCCGTCCTAGCTGTGGCCACCACGGTCATCAATTCACTGGTGATAACAGCCATTCTGGTCACTCGCAAGCTCCATCAGCCAGCTAACTATTTGATTTGCTCGTTGGCCCTCACTGATCTCCTGGTGGCCGCACTCGTAATGCCAGTCAGCATCGTCTACATAGCGGAAGAGACGTGGGTGCTGGGGCCAGCCATGTGCCACCTGTGGCTGGGCGTGGACGTTACCTGCTGCACCTGCTCCATTCTGCACCTGGCTGCCATCGCCCATGACCGCTACCGTGCCATCACAGACGCTGTGGCATACTCGCAAAAACGCACATCTCAGAGAGCAGCTGTGACCATCGTAGTGGTCTGGGTGCTTTCTGTACTTGTCTCGCTCCCCCCTCTCATGTGGAGGAAGATGCCTGAAGAAAGCAGGCAACATGGAATGATGGAGTGCATGATGGAGCACGACCATGTCGCCTTTACTGTCTACTCAACTTTCGGCGCGTTTTACATCCCGCTTGTCCTCATACTGGTGCTCTACTACAAGATCTACCGTGCGGCACAAACACTGCGCAACCGGCGAGGCAGCAGCCGACTGGTGAAGCAGACGGTCAATAGTGTCATTGTGAGTTCAGACAGGGAAGCTCCACCACTCAGTCCAGACACGCTCAGCCCCACCGAGAAATCCTTTTCAGAGCCATCGACAGATGGAGAGCGTGTCAGGATCACGCCCACCACGGGTAGGGTGTTCAAGAACCGACGGAATCCTGCCGCCAGGGAGAGACGAGCAGCCCTCACTCTCGGCCTCATTCTCGGGGCCTTTGTGATCTGCTGGCTGCCTTTCTTTCTCAAAGAGGTCATCGTGAACACATGCCCTTCTTGCAGTACGTCAGCTCTGCTTGCGGACTTCCTTACCTGGCTGGGCTATCTGAATTCCCTCATCAACCCACTTATATACACCATCTTCAACGAGGACTTTAAAAAAGCCTTTCAGAAACTCATCCCTTTGTGTTGTACCCAGTACAGGTGAACTGTACAGGACTGTTGAGAAGGGTAACAGACTTTACAcagttaaaataatgttaagaATCATCAAATActtaatataaaacatacacCAGTAGTTggacaatcttttttttaaaaccaaaacagCATAAAACTTTCTTGGAGCTTTGACCAAAACAAATTTGAATAATGGAAAATTGCAGTTGTTGCCTCAACAGTACACCAGTGACAGAAGATAATGGTTGCCACATGTATTGAGTAGACTGAAGAGGTGCCAAGAGACTTTATGGCTATTTCTGAGATCACCTTTCTTTAGATCTTTTTGTAATAAGTTTAAATCTTAATTTCAGCCTCAACTCCCTTTCCTCCCCAAGGCAATTTTCATGATTTCAACATTCTATCATAACCTGACATGCTCCCTCTCACAAGTCATTTTCCAAAGCTACTTGGAATATGCAACCAGGTTCACATTCAAACATATTGGTACAATGTGCATGACATTTCCATTTTATCTTAATAAAACTGGCCAGTACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444590 lncRNA upstream 17666 13436647 ~ 13437057 (+) True G375422
TU444391 lncRNA upstream 131854 13321273 ~ 13322869 (+) True G375270
XR_004577343.1 lncRNA upstream 339567 13110314 ~ 13115156 (+) True LOC117596171
TU444368 lncRNA upstream 360302 13094222 ~ 13094421 (+) True G375249
TU444357 lncRNA upstream 419221 13035210 ~ 13035502 (+) True G375238
TU444602 lncRNA downstream 415 13476476 ~ 13478259 (+) True G375431
XR_004577349.1 lncRNA downstream 58227 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA downstream 72436 13548497 ~ 13554600 (+) True LOC117596173
TU444671 lncRNA downstream 226066 13702127 ~ 13796535 (+) True G375496
TU444905 lncRNA downstream 545089 14021150 ~ 14021535 (+) True G375710
XM_026932376.2 mRNA upstream 18890 13428573 ~ 13435833 (+) True chmp2bb
XM_026932368.2 mRNA upstream 59943 13353925 ~ 13394780 (+) True dhrsx
XM_026932366.2 mRNA upstream 59943 13361642 ~ 13394780 (+) False dhrsx
XM_026932367.2 mRNA upstream 59943 13361642 ~ 13394780 (+) False dhrsx
XM_026932116.2 mRNA upstream 152607 13288826 ~ 13302116 (+) True mxra5a
XM_026932040.2 mRNA downstream 2761 13478822 ~ 13490069 (+) True znf654
XM_034300094.1 mRNA downstream 14270 13490331 ~ 13498432 (+) False arl13b
XM_026932184.2 mRNA downstream 14271 13490332 ~ 13502491 (+) True arl13b
XM_026932186.2 mRNA downstream 14271 13490332 ~ 13502491 (+) False arl13b
XM_026932187.2 mRNA downstream 14271 13490332 ~ 13502491 (+) False arl13b
TU442901 other upstream 2445103 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3578170 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5300868 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6735897 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8246992 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 540462 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 547189 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1603679 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1638411 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1873193 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile