RNA id: XM_026932187.2


Basic Information

Item Value
RNA id XM_026932187.2
length 3433
RNA type mRNA
GC content 0.43
exon number 10
gene id arl13b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13490331 ~ 13502491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGAAATCACGGCCGCAGCCATAGCAGCCGGTGGCGTAAACAAAAAGCATAGAGAGCGTTTTAATGAAGCGCTAGCTAGCAAAGTCGCAATAAAGTTTACTAACTAGAGcgatatacatttttaaaaaaggctcATTTTGTTTTGGTTGGCTTGTTGAATattcaaagatttaaaaatatatttagaagAGCTACGAACATAGCTAATTCGTAAATGTTAGCAGGCTAGCACAGGTTAGCTTTAAAAGTCGACTGACGCTATGCTAGTACTGTGTTTAATTAGCCGAATATTATGGGATGTAGCTAGTTAGCTGTCTAGAGCCTAactgtgttaatgttaaagGAAGTAAAGTAGCCAGGTAATGATgctctgatttttaaaatgttctctaGCTGCCTGGTTAACTCGCTATAAAGGTTCATTGTGAGAGAGCTGAAGTTTCCAGGTCCATGAGTTTGGACTGTGATGTTCAGTCTGATGGCGAACTGCTGCAGCTGGCTGAAACGGTGGAGAGAGCCTGCCAGGAAGGTGACGCTGGTGATGGTGGGACTGGACAATGCTGGGAAAACTGCCACAGTACGGGGCATCCAGGGAGAGAGTCCTCTTGATGTAGCACCCACGGTGGGCTTCTCCAAAGTGGACCTAAAGCAGGGCAAGTTCGAGGTCACGATCTTTGACCTCGGTGGAGGGAAGCGGATCCGGGGCATCTGGAAGAACTACTACTCTGAGTCTTACGGTGTGGTGTTCGTGGTGGATTCGAGCGATGTGCAGAGGATCCAGGAGACCAGAGACACCATGGCAGAAGTGCTGCGGCACCCTCGCATCGCCGGCAAGCCCGTGCTAGTGCTGGCCAACAAGCAGGACCAAGACGGAGCAATGGCTGAAGCGGACATCATTGAGAGCCTGTCACTGGAAAAGCTTGTCAACGAGAACAAGTGTCTCTGTCAGATTGAACCATGTTCGGCAGTCCTGGGCTACGGTAAGAAGATCGACAAGTCCATCAAGAATGGCCTGAACTGGCTCCTGAGCAACATCGCCAAAGACTACGAGGCAATCACGGAGCGTGTTCAGAGGGACACGGCCGAGCAGCGTGTACAGGAGGAGCAGGATAAGAAGGAGAGAGCGGAGCGAGTGAAACGAATCCGAGAGGAgagAGACAGACAAGAGCGTGAAGAGGCGGAGAAAGCAGGCAGGCAAATAAAGGAGGAGGAGTCCGAGGATGCCGATATGTCCAACCCATTCCAGCCAATAAACCATATTGTTGCAGAGAATGAAAACAagttgaaaaaagaaatggagatGAAAAAGCAAGGCGAGGAGGTCATGCAGGATGGCGTCCTGGAGCCAAAGAGCAAacaggaggatgaggaggaggaggaggaggaagaacaggaagaggaagagagtgaaagacagacCCCAGAGAGCCCAGAATCAGGTCCAACAGACCAGAGCAAAAAGAAGATCAAGAAAATACGGCTCAAGCGGAAAAACAGAGTCGACCCTCTCATAATGGACGATGCAGCCAAGAGCCCGACTCCACCACCCGCACCAGATTTCTATGGCAAGCCCCTCCCACCTGTAGCAATTAGACAGAGACCAAACGGCGAAACCCATGATGTCATTTCCTAGCCTTTCCTCCTCTTTCCCCTCATACGGTTAGAGATGCCTCGTCTCCACCAATCACggtcttttgttttatttctctcatctCCAAGCCCGCGCTGTGTAAATACGCAACAATCACCAGCCAGTGTCAGCGAGAGGAACCAATCAGCTTGCTTGGAGGGATCATGTGACCAGCCAAGGACGGGAATTCCACAGAGACTCGTGGTTTATTGTAAACTTTCAGCAGTGACTGAATTTAGATctacattataaaaatgtagacattttatttttccaccaaACAAAGAAGCATTATAATCTCAGTTAATAAGATTATAATGTTCATtgaaatgtttatgtataaatctttatttttagaCTGAATCACATATAACTGTGAAATCTGCTCTTTTTGAAagatatattagatatattaaataacactACAACTGTGCTGAACAGACACTGGTGCAGAAATCGTTCTCACTCGTGGACATGCTCATTATCAAGCTGTTGTGATTAAAAGCTTCGAACACCGTGAAGGCTTGTGCATGAGCATGTAATGATGAAACATACTggtattttatgtcatttccAGCCTGCTCAATTTCAATTTTTCTACACAGATGTTCTACACATCTGAAAGCAAACACTTTTCAGGATTTTGCTGGTATACATGCCTACCACAACTTCCAAGATCTCACCAGCAGTTAACCACACAACAtattgttaaaggaaaaattcacCCTGAACgtcttgcatattaatctttattatttaacatgtaaTCATCAAcagcatccaagatttattttacaatgaaattctgagttgtctctttaaatttaaacaacTTCTATCAacatgttggtctgttttcCTACATTaaccacaatgccatttgactacctgctggTTATGGTAAAAGCCCTGGCTTCGTCTCTACCTATAGAGTGTGATGCAGCAGCGTTTTACTTCTttaatctgtccagctctctcacctcctcatccgTACACTCTGCTTAAACAGATCAGTTTCCAAAGCTTTTATGCTAATACTGCCGTCACTGCCATCGCGCTCATCATCTGGTAGATCAGATCTCTAGCCGTGCTTCGCgttgcattgcattctggggcTTTTTGAGTGCATTGGTTTTACTTCTACTCTGAATTTcccattaataaatattatacactacaaaatggtgagtgagaaaagaagctctctTATTTTTAGAGCTGAAaattatcccttatgtttgaaaCTTATTGTAACTTCACTAGCAGTGTCCTTCTGCACCATCATTGCGGCGCATaaccgctaacttctcacagaaataacaaaaatacagaaccAGCCAACAAATAAGCACCCGTATgactaaacacatcacagatACTTCAATCGAAACACATTtactgtgtttcagggtggagttttcctttaaagtgAATATTTTCCCGATGGGAAACACACAGCAGAATTCTTTAACGAGTGCACCGAGaagcatttcattttcactggTTTATAGACACTTTATCAACAACGTGTTTTTGTTGTTAAGCCGAAGCATGTACGGACTACAGCGTAGTGCTTCGTTTGAAAAgggcagtgttttttttctaacagtaGCAGTTGAGACTGATTAAATCTATTGTTGAAGTCTTGTTGTGCAGAAACACATTTCCCAAACCATGAAATGCTAAATTGAGCTGGAACATCTGACACACACTACATTGATTTCACATTTAGAGGTATATTCGTTTTTATCACAGATATGTACTGTAAATGGCATAGGtaggttatttatttagttttttt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007275 multicellular organism development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005929 cilium cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444602 lncRNA upstream 12073 13476476 ~ 13478259 (+) True G375431
TU444590 lncRNA upstream 53275 13436647 ~ 13437057 (+) True G375422
TU444391 lncRNA upstream 167463 13321273 ~ 13322869 (+) True G375270
XR_004577343.1 lncRNA upstream 375176 13110314 ~ 13115156 (+) True LOC117596171
TU444368 lncRNA upstream 395911 13094222 ~ 13094421 (+) True G375249
XR_004577349.1 lncRNA downstream 31797 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA downstream 46006 13548497 ~ 13554600 (+) True LOC117596173
TU444671 lncRNA downstream 199636 13702127 ~ 13796535 (+) True G375496
TU444905 lncRNA downstream 518659 14021150 ~ 14021535 (+) True G375710
TU444906 lncRNA downstream 533850 14036341 ~ 14042614 (+) False G375711
XM_026932040.2 mRNA upstream 263 13478822 ~ 13490069 (+) True znf654
XM_026932112.2 mRNA upstream 14271 13454723 ~ 13476061 (+) True htr1fb
XM_034299889.1 mRNA upstream 14271 13454723 ~ 13476061 (+) False htr1fb
XM_026932113.2 mRNA upstream 14271 13454723 ~ 13476061 (+) False htr1fb
XM_026932376.2 mRNA upstream 54499 13428573 ~ 13435833 (+) True chmp2bb
XM_026931693.2 mRNA downstream 5582 13508073 ~ 13517770 (+) True nsun3
XM_026932073.2 mRNA downstream 135141 13637632 ~ 13771850 (+) True epha6
XM_026932042.2 mRNA downstream 286071 13788562 ~ 13794334 (+) True arl6
XM_026931701.2 mRNA downstream 299909 13802400 ~ 13812366 (+) True slc5a7a
XM_026931640.2 mRNA downstream 329835 13832326 ~ 13834991 (+) True kctd12.2
TU442901 other upstream 2480712 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3613779 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5336477 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6771506 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8282601 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 514032 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 520759 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1577249 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1611981 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1846763 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile