RNA id: XM_026932073.2


Basic Information

Item Value
RNA id XM_026932073.2
length 3958
RNA type mRNA
GC content 0.53
exon number 17
gene id epha6
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13637632 ~ 13771850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaggcgggATTTTGACAGAACTCTGACAGAACGACGCTGTGGTGATGTCCTGAGGACCTCCTTTTAAtactgaaaagaagaagaagaagaagaagaagaaagagaaggagaagaaggagaagaagtcGACGTGAAAGAGTCTCTTTCATGGGATAAAAATTCCTACAGGACAAGTTTATCTGTCATTTACCGAGCTATGGATTGGTGTTTGAGCCGCTTAGCCGCGGTCCAACGGCGATTTCAAACGATTTAAAGTAGTTTAAGGAATTTCTAAACACGATTGGTAATCTGTTTCTTTTCACAGAGGACCCTCGCTGTACTggatacttttaaaaatgacttttcagcTCAGAATTTGCCTCAGTTTTGCGTTAATGGGAGTAACGTTAACGGACCCCGAGCATCCCAACCAAGtGGTTCTCCTGGACACCACAGCTGTATTGGGAGAACTTGGCTGGATGACCTACCCAGTAAATGGGTGGGACGCCATCACAGAGATGGATGAGCAGAACCGGCCCATCCACACCTTCCAGGTGTGCCATGTCATGGAGCCAAACCAAAACAACTGGCTGCGCTCGAGCTGGATCGCACGACAGGAGGCACAGAGGATCTATGTTGAGCTGCGGTTCACGCTGCGTGACTGCAACAGCATCCCATGGGTATCAGGTACATGCAAAGAGACCTTCAACCTGCACTACCTGGAGACGGACGAGCCTCACAGCCACTTCCGTCCCTCTGACTACGCCAAGATAGACACAATTGCAGCCGATGAAAGCTTTACGCAGACAGACGTGGGTGAGCGAGTTCTCCGGCTGAACACAGAGGTGCGCGAGCTAGGGCCTGTGCACACCAAAGGCTTCTACCTTGCCTTCCAGGATGTGGGCGCATGCATCGCCCTGCTCTCAGTGCGCGTCTACTACAAGAAGTGTCCATCCACACTGAGGAACCTGGCTGCTTTCCCTGACACGGTGCCACGTGTCCACTCGTCTGCTCTGGTGGAGGTGAGGGGAGCCTGTGTGTTGAACGCCGAAGAGCGAGACACGCCACGACTATACTGCAGCGCTGACGGGGACTGGCTCGTCCCActgggcaggtgtgtgtgcagcgtTGGCTATGAAGAGAGTGACGGCCTCTGTCTGgCCTGTAAAGCTGGATTCTACAAGGCCTTCGCAGGGAATATCAAGTGCTCTAAGTGCCCTCCACACAGTTTCAGCCACTCGGAGGCGTCGGCGCTGTGCCACTGCGAGAAAGGCTACTACAGAGCGGGCAAAGACCCGCCGAGCACCGCCTGCACACGACCGCCCTCACCTCCGCGTAATGTGGTGTACATCATGAATGAGACGGCCCTGTTCCTGCAGTGGGCTCCACCCAGCGACACGGGCGGCCGGAAGGACGTAACCTACAACGTCCTGTGCCAGCGCTGTAGTGTCGAGGGCCAGGCCTGCCAACCGTGCGACAGCGACGTGCGCTTCGTGCCGCCGGCCATGGGCCTGACGCGCACCTCAGTGGCCGTGCAGGACTTTGTGGCCAACGCTAACTACACGTTCCAGATAGAGGCGGTTAACGGCGTGTCGGGAATGGgacgagcagagagacagatggccAACATCACTATCAGCACCGCGCaggctgGTCCATCTCTGGTGGCAGCGGTGAAGAAGGACTGGGCCACTCAGAGCACCATCGCCCTCTCCTGGCAGGAGGCCGAACAACCCCACGCTGCCATCCTGGACTACGAGATCAAGTACTACGAGAAGGAGCAGGAGCAGTTGAGCTACTCGTCCACTCGCACTAAAGGTCCCAGCACGATCGTAACGGGCCTCAAGCCATCCACAGTCTACGTGTTCCACATCCGAGCTCGCACAGCAGCCGGCTACAGCAGCTACAGCTCCAAGTTTGAGTTCACCACAGGGGATGATGaTTCAGAGGAGGCGTCTGATCAGGGCCAGGTGTTGGTGATCGTTACCGCAGCAGTCGGGGGCTTCTCTCTGCTCGTCATCCTCACACTTTTTCTGCTCATCACCGGCAGGTGCCAGTGGTACATCAAGTCCAAGATGAAACCACAGGACAAGAGAAGGACACAGTATCAGAATGGacacgTGCCGTTCCCGGGAATAAAGACGTACGTTGATCCGGACACTTATGAGGATCCGTCTCAGGCTGTTCACGACTTTGCTAAGGAGATCGACCCGTCTCGTATTCGTATAGAGAGAGTCATCGGAGCTGgTGAGTTTGGGGAAGTGTGTAGTGGTCGTCTCCGCAATCCAGGGAAAAAGGAGATTCCTGTGGCCATAAAGACCCTAAAGGGTGGCTACACAGAGCGTCAGAGGCGGGACTTCCTGCGAGAGGCCAGCATCATGGGACAGTTCGACAACCCCAACATCATCAGACTGGAGGGCGTGGTCACAAAGAgtcgtCCTGTGATGATCGTGGTGGAGTACATGGAGAACGGCTCATTGGACTCTTTCCTGAGGAAGCACGACGGACACTTCACCGTCATCCAGCTGGTCGGTATGCTGCGCGGCATCGCCTCCGGTATGATGTACCTGTCCGACATCGGCTACGTCCACCGGGACCTGGCAGCCCGGAACATTCTGGTGGATGACAACCTGGTGTGTAAGGTGTCGGACTTCGGCCTATCCAGGGTCCTGGAGGACGACCCAGAGGCTTCCTACACCAccacaGGAGGGAAGATTCCTATCCGTTGGACGGCTCCAGAGGCCATCCAGTACAGGAAGTTCTCCTCAGCCAGCGACGCCTGGAGCTACGGCATCGTCATGTGGGAAGTGATGTCTTATGGAGAGCGACCGTACTGGGAGATGTCCAATCAGGATGTGATCCTGTCCATAGAGGAGGGTTACAGGCTGCCAGCACCCATGGGCTGCCCCGTAGCTCTGCACCAGCTGATGGTTCACTGCTGGCAGAAGGAGCGCAGCAGGCGGCCTCGCTTCCACGATATTCTCAGCTTCCTGGACAAGCTCATCCGCAACCCCAGCAGCCTCCTCACGCTGGTGGAGGATGTGCACAGTTTACCCGAATCCCCAGAAGACTTGCCTGACTATCCTCTCTTCATTTCCATCGGCGACTGGCTGGACTCCATCAAAATGAGTCAGTACAAGAGCAACTTCATAGCGGCAGGGTACACGACTCTGGACTCCATCTCCAGCATGAGCATCGAAGATGTCAGGAGGATCGGCGTGTCCCTGATCGGCCACCAGAGGAGGATAGTGAGCAGCATACAGACACTGCGACTGCAGCTCCTGCACATTCAACAGAGTGGCTTCCACGTATGAGACGGACCAGCCAACaccaacacatgcacacacacgcgcacacacacacacttacactaacacacatatacacgaacacacgcatacacgcacacacgcatacacaaaTAGTCAGGCCTGGTCTGTTTCAATAACCGCGATGAGAGAACTTCAAGCTTTCTCAAAACTTTTCAACCAGCCGTCGAAGGCTTCCAAATGAAAAAGCAATCAAAGGGAAAAAGGGACCAGTGTGAAACAAAGAGTCTCTGGGAGATGGACAACCAATCAGGGTTGGAAACATGGCACTGTCACTATGGTGATGTCATCTGTCAGTCATCCTCAAGTTCTGTGACTGGCTGGATTCACAGTCGGAGAACTTTTAATAGTATATTTGctattttaatgtaacaaagTATGTGTCTTAATagatatttatcatttatttatcatgctACTTCCAGGAATCGAGAGACGTTGAATGTTAAGTGGATTTCTATGGCTATGACCCATCATTTATCATCTGATATTTATGCTGGtatttatatgtacatgtgtatgtcggggtttttttatttattgtttttttctgcagcaATATGTGCAGTCTTTTACGGAGAACAAGAAAAGACGCAAGATTAAGGAGTAGGAGTAGAGAATTGTATtttgaaaaggggaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577349.1 lncRNA upstream 83032 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA upstream 83032 13548497 ~ 13554600 (+) True LOC117596173
TU444602 lncRNA upstream 159373 13476476 ~ 13478259 (+) True G375431
TU444590 lncRNA upstream 200575 13436647 ~ 13437057 (+) True G375422
TU444391 lncRNA upstream 314763 13321273 ~ 13322869 (+) True G375270
TU444905 lncRNA downstream 249300 14021150 ~ 14021535 (+) True G375710
TU444906 lncRNA downstream 264491 14036341 ~ 14042614 (+) False G375711
TU444909 lncRNA downstream 264491 14036341 ~ 14042614 (+) True G375711
TU444948 lncRNA downstream 367529 14139379 ~ 14141880 (+) True G375739
TU444983 lncRNA downstream 419048 14190898 ~ 14192300 (+) True G375771
XM_026931693.2 mRNA upstream 119862 13508073 ~ 13517770 (+) True nsun3
XM_026932184.2 mRNA upstream 135141 13490332 ~ 13502491 (+) True arl13b
XM_026932042.2 mRNA downstream 16712 13788562 ~ 13794334 (+) True arl6
XM_026931701.2 mRNA downstream 30550 13802400 ~ 13812366 (+) True slc5a7a
XM_026931640.2 mRNA downstream 60476 13832326 ~ 13834991 (+) True kctd12.2
XM_026932034.2 mRNA downstream 146113 13917963 ~ 13942923 (+) True klf12a
XM_026931619.2 mRNA downstream 244673 14016523 ~ 14021131 (+) True gpalpp1
TU442901 other upstream 2628012 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3761079 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5483777 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6918806 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8429901 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 244673 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 251400 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1307890 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1342622 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1577404 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile