RNA id: XM_026931640.2


Basic Information

Item Value
RNA id XM_026931640.2
length 2666
RNA type mRNA
GC content 0.46
exon number 1
gene id kctd12.2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13832326 ~ 13834991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCGTGCGTAAAGAGAGTAAAGAGTTAAACTGAGCACAGTCCTCTCGTTTCCTCCTCCCACCAACTCCTTCATAAACAAACCTGCAAAGATCCGCTGtcagtctttttctttctttctttctttcccactGCTAACTCTGGGAGGAGAAGATAAAGCTGGGCTTTTGGGAGACAGATGTTGTAGCAGAAATGGCTCAAGCAGCTGAAAGGAGAGTGGAAAGCTCCACATCTGCTTTCCCTGAAATAATCGAGCTGAATGTCGGCGGACAGATTTACGTGACGCGCCACTCAACTTTACTCTCCGTCCCGAACTCTTTACTCTGGAGCATGTTTCAGGAGCACAGCTCGTCCCAGCTGACCCGGGACAGCAAAGGGCGCTACTTTATAGACCGGGACGGATTTCTGTTCCGGTACATCCTGGATTACCTGCGCGACAAGAACCTGGCGCTGCCCGAGTACTTCAAAGAGCGAGCGAGTCTGCAGAAAGAGGCTGAGTTTTTCCAGCTGCCCGATCTGGCACGTCGTCTCCGGCCTCCTCAGGTCAGTAAGGAGAACTCTATCGGGGATGAGGCGTTTCACAGCGACCCGGAGGAAGCAGCGGTGTCGTGCGCCCTCGCCAGTGCCAGTGCCAGCGGCAGCAGCGCCATCGGGCCGCGCTCTCCGTCTCTGGAAGCGCGCAAGTCTGGCTACATCACCGTCGGCTACCGCGGCTCGTACACGATCGGACGCGACATCCAGAACGACGCCAAGTTCCGCCGTGTGGCCCGGATTACCGTGTGCGGCAAAACCTCGCTCGCCAAGGAGGTGTTCGGCGACACGCTGAACGAGAGCAGGGACCCCGACCGCCCCCCGGAGAGGTACACGTCCCGCTATTACCTCAAGTACAACTTTCTGGAGCAGGCGTTCGACCGGCTGGCCGAGGTGGGCTTCCACATGGTGGCGTGCAACTCCACAGGGACGTGTGCGTACACCAGCAGCGACCCCAATGAGGACAAAATCTGGACCAGTTACACCGAGTATGTGTTTTGCAGAGAGTGAGGCGAGGTGgacctgctttttttctttttgttgttggaACCCGTGCCAATTTCCACCAGTTTCATAGCACTGCTACACGTGTACTCTCACAAATGatggtaccaaactgtacttttccttgtcacttgagtggtaccatcaagggtacatcttgTACCTtcagtatgtatcttttacctggaaaagTGCATGTGGTGCACTTTTTAATCACTTGTCCTcaaggtccaattatgtaccttatattatttttaactggGAATGATACATAAAGGATGTACCCTTGATTCTACCACACCAGTGGCAAGCAACAGCACAGTTTGGAACCATTATTTCAGAGAGTGTACTCTCAAAAAAAGGTACTAATGCTTGTCATTGGGGTTGTATAACCACAAGAGTGTACGACTTGTACTTGTAGCATGTATCATTCACCTAGGGAAGTGAAGTAGCagtgtagtgtacctttaaaattcCTGTCATACCTTATATCAGGGGTTCTCAGCTCCAGTTGTGGGACCCACTACCACCCtgacacacctgattcaacagATTGACCCCTTTCATGGGTCAGAGGTGTGTCAGAAGTAGAGAGAAATTGAGAACCATGGGTGATGCACGGAAAGGAAGTTTGGAGATGATTCCAGTGCCACGAGCCCTAAGAAGACCCAAGAGAATGAAAattgttcagtgtgttaatcTGTCAGGGTGCCAAAAATGTCTGccttaaatgtgtttaaaggtAAACCACATCCACTTTGTTAGACAAAGGATGCATACTACAGGTACTAATGATGTACTAATGAGGATACCACAATATTGAGAAGCAATGATACAGtctaatatctttttttttttttttttttggccccaGTACAGCTCAGTACCTGTTTTTCCCAGAGTGGGCCTTGTAGATGTGTGATAATATCAGTCCACACAGATTAGCATAAATACGTAGTGTGTTTGTCAGAAGTTTAATGAATAGCAAGCATCAGAAGCATTTGGCACTCATGTTATTAAGGTTACACAATTCAGAAAGGTTTGTTAAGAATGCACAGTAAAAACCCACTCGTGTTTTGATATCATGTGCACACAGGCATGCCCAGACATGGGTGGTTTGGTTTGTGCAGGCATGTGCAGGGAAGGTAATGTTACCTGTTTGAGGAGAAATGTGACTGAAATGTGGAGACCTGTTGCATGACATGGAGGACAAGGAGGACATTGCTCCTCTTTTAACTCACTGCCATTTCATCTTAACAACCCACTGACTGTTTTCCCGGTCGTTGTCCTTTTCTGATCTCTCCCACTGGATATATTTTTCCGAGTGGTTGCTGTCACTGTCTCATGGTGTTTTTCAGTAAGCAGAGTTTCAGTTTCCTGTGTGATGTAAACTGTTTTAGCTCACATAAAATCAGCTGTTTCCATTTTGCTCTATCAGATAGCAATAGGACCCTAAATATATGGCTGTCTCTGTACTAAACAAACTCTCTCACTCTGAATTTTTAACCAACTCTTTCCCCTCTGAACTAAatgatgtgatttattttcttcacacttgtatattttaaattcctCATGGTTTTCTTGTATGACTGaaacaataaactaaatataaaaaggCATTCATGTTTA

Function

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444671 lncRNA upstream 35791 13702127 ~ 13796535 (+) True G375496
XR_004577349.1 lncRNA upstream 277726 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA upstream 277726 13548497 ~ 13554600 (+) True LOC117596173
TU444602 lncRNA upstream 354067 13476476 ~ 13478259 (+) True G375431
TU444590 lncRNA upstream 395269 13436647 ~ 13437057 (+) True G375422
TU444905 lncRNA downstream 186159 14021150 ~ 14021535 (+) True G375710
TU444906 lncRNA downstream 201350 14036341 ~ 14042614 (+) False G375711
TU444909 lncRNA downstream 201350 14036341 ~ 14042614 (+) True G375711
TU444948 lncRNA downstream 304388 14139379 ~ 14141880 (+) True G375739
TU444983 lncRNA downstream 355907 14190898 ~ 14192300 (+) True G375771
XM_026931701.2 mRNA upstream 19960 13802400 ~ 13812366 (+) True slc5a7a
XM_026932042.2 mRNA upstream 37992 13788562 ~ 13794334 (+) True arl6
XM_026932073.2 mRNA upstream 60476 13637632 ~ 13771850 (+) True epha6
XM_026931693.2 mRNA upstream 314556 13508073 ~ 13517770 (+) True nsun3
XM_026932188.2 mRNA upstream 329835 13490332 ~ 13502491 (+) False arl13b
XM_026932034.2 mRNA downstream 82972 13917963 ~ 13942923 (+) True klf12a
XM_026931619.2 mRNA downstream 181532 14016523 ~ 14021131 (+) True gpalpp1
XM_026932165.2 mRNA downstream 188498 14023489 ~ 14033839 (+) True gtf2f2a
XM_026932166.2 mRNA downstream 188501 14023492 ~ 14033839 (+) False gtf2f2a
XM_026932360.2 mRNA downstream 208968 14043959 ~ 14060786 (+) True LOC113537730
TU442901 other upstream 2822706 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3955773 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5678471 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 7113500 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8624595 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 181532 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 188259 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1244749 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1279481 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 1514263 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile