Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026932165.2 |
| length | 1357 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 9 |
| gene id | gtf2f2a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 14023489 ~ 14033839 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0005674 | transcription factor TFIIF complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| id | description |
|---|---|
| K03139 | TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU444905 | lncRNA | upstream | 1954 | 14021150 ~ 14021535 (+) | True | G375710 |
| TU444671 | lncRNA | upstream | 226954 | 13702127 ~ 13796535 (+) | True | G375496 |
| XR_004577349.1 | lncRNA | upstream | 468889 | 13534288 ~ 13554600 (+) | False | LOC117596173 |
| XR_004577350.1 | lncRNA | upstream | 468889 | 13548497 ~ 13554600 (+) | True | LOC117596173 |
| TU444602 | lncRNA | upstream | 545230 | 13476476 ~ 13478259 (+) | True | G375431 |
| TU444906 | lncRNA | downstream | 2502 | 14036341 ~ 14042614 (+) | False | G375711 |
| TU444909 | lncRNA | downstream | 2502 | 14036341 ~ 14042614 (+) | True | G375711 |
| TU444948 | lncRNA | downstream | 105540 | 14139379 ~ 14141880 (+) | True | G375739 |
| TU444983 | lncRNA | downstream | 157059 | 14190898 ~ 14192300 (+) | True | G375771 |
| TU444987 | lncRNA | downstream | 169836 | 14203675 ~ 14204359 (+) | True | G375774 |
| XM_026931619.2 | mRNA | upstream | 2358 | 14016523 ~ 14021131 (+) | True | gpalpp1 |
| XM_026932034.2 | mRNA | upstream | 80566 | 13917963 ~ 13942923 (+) | True | klf12a |
| XM_026931640.2 | mRNA | upstream | 188498 | 13832326 ~ 13834991 (+) | True | kctd12.2 |
| XM_026931701.2 | mRNA | upstream | 211123 | 13802400 ~ 13812366 (+) | True | slc5a7a |
| XM_026932042.2 | mRNA | upstream | 229155 | 13788562 ~ 13794334 (+) | True | arl6 |
| XM_026932360.2 | mRNA | downstream | 10120 | 14043959 ~ 14060786 (+) | True | LOC113537730 |
| XM_026932359.2 | mRNA | downstream | 10120 | 14043959 ~ 14060786 (+) | False | LOC113537730 |
| XM_034299978.1 | mRNA | downstream | 41247 | 14075086 ~ 14084654 (+) | False | LOC113537316 |
| XM_034299977.1 | mRNA | downstream | 41248 | 14075087 ~ 14081803 (+) | True | LOC113537316 |
| XM_026932238.2 | mRNA | downstream | 87199 | 14121038 ~ 14127293 (+) | False | LOC113537635 |
| XR_004577362.1 | other | upstream | 2358 | 14016523 ~ 14021131 (+) | False | gpalpp1 |
| TU442901 | other | upstream | 3013869 | 11006008 ~ 11009620 (+) | True | G373955 |
| TU442162 | other | upstream | 4146936 | 9839096 ~ 9876553 (+) | True | LOC117596102 |
| TU441073 | other | upstream | 5869634 | 8149960 ~ 8153855 (+) | True | G372351 |
| XR_003403794.1 | other | upstream | 7304663 | 6718694 ~ 6718826 (+) | True | LOC113537770 |
| TU445701 | other | downstream | 1045901 | 15079740 ~ 15091481 (+) | False | rfx1b |
| TU445724 | other | downstream | 1080633 | 15114472 ~ 15116856 (+) | False | smdt1b |
| trnaq-cug_18 | other | downstream | 1315415 | 15349254 ~ 15349325 (+) | True | trnaq-cug_18 |
| TU445810 | other | downstream | 1387560 | 15421399 ~ 15424798 (+) | True | G376467 |
| TU445848 | other | downstream | 1457207 | 15491046 ~ 15492518 (+) | False | G376488 |
