RNA id: TU442901


Basic Information

Item Value
RNA id TU442901
length 3447
RNA type TUCP
GC content 0.46
exon number 2
gene id G373955
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11006008 ~ 11009620 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCCGTGTTAAATgtctaaactttatttaaagctAGGACAGTAAGTActcaaaaggaaaaatatatattttaacaacaaGGGTAAGGGTTAAGCAAACCCAATAGTGCAAAGGAAAAACAAGGCATGTGTGtggagagggagacaggagTAAAAGTCAAGAAGGAAGACTTACAAACTCAATGAGAAgagtaacaaaatacaaaaacaattagtatatgcattaaaaatgtcatgataaacacacacaaatgccaAGCTCATCCCACAGTTCTTTTGTCTTGAATAATTCATTTTGGCATGTTCTGTGAACTCCACAATTCATGCCAGTCCAAGGCAACTCacttttaaaaagagagaaacaaaatagtttttctaATTgtaattagtagtagtagttattgcaCATACAGGACTTTTAAGCCATATACTGATAGCGTACTATTAATAGCGTTAGGGTATGGCACTACCATTTGAATGATCAGCCTGTTCTTTCCCCCTTAAAATCTTCCTTTTTTTGGCATTAAGACAAACCTGGGAAGACCCTGACAGACAGCAAGGAACACTGAAAGGTGCATTGGCAAACTGTAGTCTATACATTACCTGTCAAGAAGCTATCAGTCTTTTCGCATATTGTGGAGTAGTAGGGATGTGGTGCGTTAAGATCCAAGTCTTGTTGGTGCTCCGAGGAGGAAGCGCTATCCAAGCCTGTCTCAGTGGGGACAGTGCCTCCTAGTGAGCAAGGCTCTGGCAACTCCTCAGTGACCTTCTCACAAAGCATGTACTGCTGCTCTGAGTTCACCGGAAGCTCCCCTTGCTGGTCAAGGAGGTCAACATCTGCAGGAGCACAGGCAGGTGAAAGGTTCAGCTCCTTAATAAGTGATGGGTCTTTGGCCTCATCCGGAAGCTGCTCTTCATTTTCGAGAGAAAAAATGCCTGGGCTTTTGATACAGCTCTCTGTGGTAGATTGGGCATTAGAATTAGAGGTGGTGCACTCAAAACCATAGGAGGCAGCTGAAGTGGCAGACTGCGGCGTGTCACTACCACCACCTCCCTCCATCTCAACACAGGCCTCCTCACATTCCTCCACCAAGGCTGACATGCTGTGGACAACTTGGGTGCTATCAAAGCATTCGTTTCCAGTGGAACCAGGTTCAGTAGGGTCACTGATCTGCATGTCCCCTTCTGTGTCACTAGCCTCATCCCCTGTGGCAGAAGAATGGGAGGATGGTGCAGAAGTTGTCACCGTTGACAGACCAGCCAACATGTCATCTGCAGGCAGAGTCTCAGGTTCTTCCTCTTCATGTTCAGATCCTGCACGATCAGATCTACAGATACCTAAATCCTGCATGATGTCTGGCAAAGCAACAGGAATTGGGCTAGCTGGTAAGGGCTGTTTTTGGTTCTCTAGTCCAGGGCTTATACTGTAGTCTTTTAGCTCCTCAGGTGTGCTTGCATCACTGCAAGTATGGATGGCTAGTTCTGTGCCAAGCAAAGTGCTAGACTGAGAAATGCGTTGGGAATGGGATGCCAAGCCTGGTTTGATGCCCATATCCATCTCTGCAGCAGGCTCTGAAGAAGGCTGAGGTGAGCTTGGAACAGGATCCGTAAGAGCTGGAGGCTGAGTTGAGGATAGATCTGTTTTGGCATTTCCAATATCCAGACAGGCTTGAGCGGCAGGTTGGTTAGGCAATTCTGAGTATGTTTGCCAAGGGTTGGAAGAAGGACTGGAGTCAAGGGTAGGATCTGGTTGTAGTGACTGCATCCAGGCATCAGCAAAAGGATTTGCTGCAGAAAGGGCAGTAGGAACAATGGATGAAGGCTGCATACGGTTCAAGTTGTCCAATCTGTAGTCTTCTGCCAAGTCATCTTCATCTGCATTTCCATAACTTTCAAGGCCACTCTCCGTAACACCCTCACTTGCCATCTCCACATCATCGTCTTCATCCTCATTATCATTGCACTGCCTGTGTGGGTCTTCTGTCATTTCTGATCCTACTTCCATATCATCAACACGATcttcgtcatcatcatcatcatcgtcgtcatcattatcatcatcttcattgACCAGAATATCAGGGAACTTCTCAAAGTCTGGAGAGCCAGCTGATGCACCTTCACCATCAGCACCTTTTAGGCTAGCCTCACCTAGATCATCCATACTTTCAGTGCCCTCTAAAACACCAGGAGCACTAAGCTCTGAGGCCCCCTGCTGGCTGCAGCTTACATCCTCAGAGTCAAATTCTGAGGGCAGGCCTCCTGCTCGCCATACTGAACCAGCCAGACCAGCTGAACCAGGCCTGGACTCTTCAGTAGGCTGTGTACCACTCATGTCAGACAGAGACACCTGCTGACTGCCCtccctctcctcttcctcttcatcatcaaGATTGCGAATTATTTGCTCTTGCTTCTCAACAATCTCCAAGTCCTTAGCGGGGACCTCACATGGTGAAGCAGTTACAGATTCTTGCTCTGTCATCTCTTGTGCCATTGGTGGTATGGTCGCAGTGtagtcatgatttttttcagattcTGGTACAACAGGTGGAGGATTAGACATTAAAAGTACAGGCACCTCAGCTACTGACTGTATAGCTAATGGGTCAGCATCTGTTGTCTCTTTGGTGGAAACAATGTCCACATTTGTAGGCTCTGAGGCAGGTATTTGCACTCCTTCTCCCTGACCTTCCACAAATGCACTGGTCTGTTGATCAGGCTGTGCTACCTCTACTGAAGGAGTTTGTGCTTCTACCACAGATTCTACAGGTGCTATGGCTGCACTTGTTACAGAGGCAGTTGTTTCCAAAATTGCAGAGGGTTCCACAGACTCTGATGACTGTTCTTCTAAAGGCTTTCCTTTGATGACTAATGGCAAAACAGATTGCGTTGGTTTGGCTGTTTGACGCTTCACAGAGACTAGGTTACTACTTACTCCCTGCTTGTGGTTACCAAACTCTGTAGCCATTTTGCCTGAAGCAGTGCGTGAGGAAGTGTTTCGGGGACTTGGAGGGACCTTCCGTGTTGGTACTTGCCTAGTTTCATCCATTTTTGGTTGAGATGTTTTAGTGTCTGTAGGTAATCGTTTGGCAGCTGTAACAGGTTTGGGGGGTTCAGGTTTGGAGGCCTTTGTAGCTGTAGAGCGTGTGGTGGTAGAGGCTAACGGTTTTCTGGCCACTGCACTGGTGGTGGTTTTTATATCTTTTTTTAGCTGCTATGGTAGTGGAGACCTTAGAAGGCTGTGATGATGCAGAGTGGGCAGCAGAGGGAGCAGAGACAGTTGTTCTTAAGGCTGAAGATTTACTAGCAGTGGTTGTTAGTCTAACTGGCGCTGAGGAAGTGGTAGGACGAGAAGCAGTTGCTACAGTAGGCCTAAAGCACAAAAAACAATGCTAGATAATTTGaaacattaaaattttattaacattGAAAGAGGGAGCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442882 lncRNA upstream 40853 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 54528 10948931 ~ 10951480 (+) True G373934
TU442861 lncRNA upstream 72205 10929744 ~ 10933803 (+) True LOC113537644
XR_004577352.1 lncRNA upstream 73689 10930729 ~ 10932319 (+) False LOC113537644
TU442796 lncRNA upstream 194991 10809826 ~ 10811017 (+) True G373871
TU442930 lncRNA downstream 52396 11062016 ~ 11064035 (+) False LOC113537724
TU442932 lncRNA downstream 60502 11070122 ~ 11091105 (+) True G373975
TU442943 lncRNA downstream 125933 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 270196 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 398635 11408255 ~ 11409661 (+) True G374262
XM_034300389.1 mRNA upstream 4330 10996738 ~ 11001678 (+) False c26h19orf67
XM_034300388.1 mRNA upstream 4330 10996922 ~ 11001678 (+) False c26h19orf67
XM_034300387.1 mRNA upstream 4330 10996925 ~ 11001678 (+) False c26h19orf67
XM_026931665.2 mRNA upstream 4438 10996931 ~ 11001570 (+) True c26h19orf67
XM_026931666.2 mRNA upstream 4438 10996931 ~ 11001570 (+) False c26h19orf67
XM_026932291.2 mRNA downstream 43474 11053094 ~ 11059498 (+) True serhl
XM_034300343.1 mRNA downstream 52684 11062304 ~ 11068002 (+) True LOC113537724
XM_026932256.2 mRNA downstream 58389 11068009 ~ 11079689 (+) False sept3
XM_026932257.2 mRNA downstream 59182 11068802 ~ 11079689 (+) False sept3
XM_026932258.2 mRNA downstream 61624 11071244 ~ 11079689 (+) True sept3
TU442162 other upstream 1129455 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2852153 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4287182 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5798277 5207595 ~ 5207731 (+) True LOC113537771
XR_003403603.2 other upstream 6092161 4664294 ~ 4913847 (+) False dmd
XR_004577362.1 other downstream 3006903 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 3013630 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4070120 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4104852 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4339634 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile