RNA id: XM_026932291.2


Basic Information

Item Value
RNA id XM_026932291.2
length 2199
RNA type mRNA
GC content 0.43
exon number 14
gene id serhl
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11053094 ~ 11059498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGTAACTTTGTCTGTGGGGTGATTTTACAGGTCAGATCGCCTgatttttgtgtatttctgcacggatctgtgtgtgtgttgctgaatGTCCCTGTCTGAGTCAGGACTAAAGCTTTTACTGTAGATACATCTCTTAAAgatgatGCAGACACTGAAAAATGTCAGACATTTGGCCACGGCAACGATGAAACATACAGTGACTGAGTTCAGGATGCCAGTGCCCTGGGGGGAGATGAGAGGCCGAGCCTGGGGTCCTGATCATGGGCGTCCTGTGCTCTGCCTGCACGGCTGGTCTGACAACTGCGGCTCCTTTAACACGCTCATCCCTCTGCTACCTGCTGatTGGAGGTGTGTTGCTGTAGATTTGCCTGGTCATGGCTTCTCCTCTCACAGACCTGCAGGAATTTTCTACACGTTTCCTGCTTATATCACAGACATCTGACGACGCGTCATTGAAGCTCTACAATGGAAACGCTTCTCCATAATTGGCCACAGTATGGGTGGAAATATAGGTGCAATGtTGAGTGTGTTGTATCCAGACATGGTGGAGGGATTAGTGCTCCTGGACTCCTATGGATTTCTCCCGATAGATGTgAAAAGAATGAGCATGATCATGAACAGAGGGATTGAGGAAATGATGGAGTATGAAAAAAAGTTGcctgaaaggaaagaaaggatctaCACCTATGAGGCGGCCAAAGAGAGGCTGAAGGCAGCAAATCAGTTTCTCTCAGACAAGTCATTAGAGATTCTTCTAGAGCGAGGACTCCAGAAGGTGGATGGAGgaGTGGTGTTCACCAGAGACATCAGAATAAACCTAACTAACATTGTGCGGATTACGTTGGAGCAGTGTCTACAGATGCAGTCACAGATAAAAACTAAAGTGCTCCTGCTGCGGGCGAGCCAGGGTTTGCAGAAGACCTTCCCCCAACCTGAGGAGTTAGCAGTTCCCTTACGAAAGGGCTGGTCAGGACTACGAAACACCTTCATAGAATTGGAAGCGGATCATCATGTGCATTTGAACAACCCTGAGCTCGTGGCACCCATCATCACTGAGTTCCTGCTGTCCCAGACGTCTCAACAAACTGCTAATGCATCCAGCATCAATCAGGCTTCAAAATTATAAAACCCGTCTTCCACACATGTATGAATTTTATGCACATACTCACCATTGCTGGATTTTAATACAAGTACCAGAACTCATTTATTCCTtctgagtgatttttttttaactaagtGATGAGAATGTAAGGCAAGGTGGAACAGGGAGGGAACAGGGAGGTGGAAGAAATATACAAGTTATAAACTAATGTTTAAAGGAATATTCAGTCATTTTTGGCCCGTCTTAACTGAAACTACATTTTTGAAACTCAAGATCCGAACAAATAGTCCCTCACTTAGTGAGGGACAATAGTCCCCCAAAGCCACACACATACTAGACAAGATGATGTGAATGCTAGTATATGAGGAAGAGTATCAGGAGGAGTGACAGGGAGCATGATTGACAGGCAGGTAGAGACGCCTCCTTTTCCCGATTGGCTGGATGTTGGTGGTCCGTATCATTTCACCCCTTTACAGCCTGGGATGTCCACAGAGGTATTTTATTGAGGAGAAATTCTCCAAATATGTGTGGCAGCCCGAGAATATGGAActgaaaactgaactgaaatatgctTCCCCTCTGCACATATCTCAGCCACAAATAAAGTTCTGGTGGTCCAAAattgaaaagggagaaaactgcatttaaagattccttTGAATGTGGTGCAGGAGcattacagacattttgacagctggtatctgattacaaactgaacagattaggcttatgtccatttcactacaGCACATAGCTATACATATTATACTGTACTCTAGTAACATTATCAAATGAATTTTCTCTGGcactgtgtttctctctcactctctctccttgtctgtTGTGTGTCCTCGGTGCTGATActtacaaatgaaataaaacaaatcagttGCACAACACAAATCACACAATATTTCACTGAGTTATTGGttatatttgcatatcagaTTGCATATCATGTATTGTTTCTTGATGAACAAAACTAGCtgtattgtcatttttattactttataacTAATGTTTTATTCGTAGTCTTTGTGATAATCTGActatgaagtattttaatgctttaaatataaaagaaaccctgctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442882 lncRNA upstream 87939 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 101614 10948931 ~ 10951480 (+) True G373934
TU442861 lncRNA upstream 119291 10929744 ~ 10933803 (+) True LOC113537644
XR_004577352.1 lncRNA upstream 120775 10930729 ~ 10932319 (+) False LOC113537644
TU442796 lncRNA upstream 242077 10809826 ~ 10811017 (+) True G373871
TU442930 lncRNA downstream 2518 11062016 ~ 11064035 (+) False LOC113537724
TU442932 lncRNA downstream 10624 11070122 ~ 11091105 (+) True G373975
TU442943 lncRNA downstream 76055 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 220318 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 348757 11408255 ~ 11409661 (+) True G374262
XM_034300389.1 mRNA upstream 51416 10996738 ~ 11001678 (+) False c26h19orf67
XM_034300388.1 mRNA upstream 51416 10996922 ~ 11001678 (+) False c26h19orf67
XM_034300387.1 mRNA upstream 51416 10996925 ~ 11001678 (+) False c26h19orf67
XM_026931665.2 mRNA upstream 51524 10996931 ~ 11001570 (+) True c26h19orf67
XM_026931666.2 mRNA upstream 51524 10996931 ~ 11001570 (+) False c26h19orf67
XM_034300343.1 mRNA downstream 2806 11062304 ~ 11068002 (+) True LOC113537724
XM_026932256.2 mRNA downstream 8511 11068009 ~ 11079689 (+) False sept3
XM_026932257.2 mRNA downstream 9304 11068802 ~ 11079689 (+) False sept3
XM_026932258.2 mRNA downstream 11746 11071244 ~ 11079689 (+) True sept3
XM_026931817.2 mRNA downstream 25044 11084542 ~ 11129515 (+) False atf7ip
TU442901 other upstream 43474 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1176541 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2899239 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4334268 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5845363 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2957025 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2963752 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4020242 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4054974 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4289756 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile