RNA id: XM_034300387.1


Basic Information

Item Value
RNA id XM_034300387.1
length 1412
RNA type mRNA
GC content 0.47
exon number 8
gene id c26h19orf67
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10996738 ~ 11001678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACGCCCGCTGAGGAGCTTTAGCTGTGAGGCGGCTAATACCGCACTTTGTCAGCATTTCAGCTTTAAACAGCCGTGGATGTGTTAGCTAACCGGCTAACATATTAGCCTTGTCAGTTAGAAATGGCGGAGATTGAGCTCGCGCGTGAGGAGCTGGTAGAGAAATTGTCATTTATTGAGACTTATAACACTGAGGAAATACAAAAAGAAGCCGACTGCAGTGCGATGGCGCCCTCTGTCGGTGAAGAAGCGAACTGCATGGAGGCGCAGCTTGCTTCTTGTCCATTTTCCACTGATCTGAAATTAATGGATAATAAATTATACCCCATAGAAGAACAACTTCAGTATCTTCTCCGCAAGGCAGACGAGTTTCAGAACCGCCTCGTCTACAGCGAAGATAATGCCCAGAATGAGGGTTTCACTCGTGTGGTGCCAACATTCCTGAAGACATGTCAGCCATATTTCAACTACTTGGAGTCTACCGCCCGCAACACTTCACCTGGCCAATCTCCACTGCCCCTGTACATACGCACCCGGCTGTTGCAGTTCTCTCAGCAACTGTGCAGTCGGCTGGAGCAGCTGGTATTAACATATGCTTCTTACGGTTACCTTTCTCTGGCTGAGACTGACCCGATGTGtgtctctcatTTCTACATTGGCCAATGTCAGGTGGATAACATCAAGCTGTCAATCTTCCGTTACTGTCAACCTACCCCCTTCCTGGCCTTGACCAGTAACAGACTGTACAAACGCATGCGCTGGAACGTGGAGCGAAAGTTCGGGACAGAGGAAGGAGtagaagaggaaaagaatgaCAACAGGACAGAAGTGACACAAAAGATGGAAGGAGAACaggagacaaagaaagagagagggatggaagGCTACAGTACAGAGTATTACTTCCTCTGCTATGAGGACGTCCACTTAGTGGAGGGAGAGGCACTGAGAGAACAGACAGATAGAAGGCCAGGGGAGGAAGCAGTATTGAGGATGTGGTCTGTAGGCAAGTGGGTACGGATATATCCAGACCCAGACACTGAAGACATCAATGACTGGGTCAGTACAAGCCGCTGGTGTATCTGGGGGAGGAGGAGCCATCGTCCTGCATTGCCACAGACTGTCTGCTGGGGCTGCTGCTGTCTCAGGCTGATCAGAGCATCACACACCCCATCACTTAAGACCGACACAGCAAGAAGAGGATGCCAGCCAACCAGGAGTGACAACATCATTCTTACAAGTTCAGTAAGAATCCATTTTCGTTTTGCTGgactttcatttgtttttaaactcaAGTGTTCACATTTGTTTTATATCTTCTATTGTATGTTTTCGTATAGTATTTTGAGACAGTGTTTTATACATTACACTTGCCACTGCTGAAAAGACAACAGACGCCATTTTACCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442882 lncRNA upstream 31770 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 45445 10948931 ~ 10951480 (+) True G373934
TU442861 lncRNA upstream 63122 10929744 ~ 10933803 (+) True LOC113537644
XR_004577352.1 lncRNA upstream 64606 10930729 ~ 10932319 (+) False LOC113537644
TU442796 lncRNA upstream 185908 10809826 ~ 10811017 (+) True G373871
TU442930 lncRNA downstream 60338 11062016 ~ 11064035 (+) False LOC113537724
TU442932 lncRNA downstream 68444 11070122 ~ 11091105 (+) True G373975
TU442943 lncRNA downstream 133875 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 278138 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 406577 11408255 ~ 11409661 (+) True G374262
XM_034299947.1 mRNA upstream 69074 10894036 ~ 10927851 (+) True pnpla6
XM_034299946.1 mRNA upstream 69074 10894036 ~ 10927851 (+) False pnpla6
XM_034299948.1 mRNA upstream 69074 10894036 ~ 10927851 (+) False pnpla6
XM_034299949.1 mRNA upstream 69074 10900656 ~ 10927851 (+) False pnpla6
XM_034300281.1 mRNA upstream 110126 10883180 ~ 10886799 (+) True LOC117596166
XM_026932291.2 mRNA downstream 51416 11053094 ~ 11059498 (+) True serhl
XM_034300343.1 mRNA downstream 60626 11062304 ~ 11068002 (+) True LOC113537724
XM_026932256.2 mRNA downstream 66331 11068009 ~ 11079689 (+) False sept3
XM_026932257.2 mRNA downstream 67124 11068802 ~ 11079689 (+) False sept3
XM_026932258.2 mRNA downstream 69566 11071244 ~ 11079689 (+) True sept3
TU442162 other upstream 1120372 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2843070 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4278099 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5789194 5207595 ~ 5207731 (+) True LOC113537771
XR_003403603.2 other upstream 6083078 4664294 ~ 4913847 (+) False dmd
TU442901 other downstream 4330 11006008 ~ 11009620 (+) True G373955
XR_004577362.1 other downstream 3014845 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 3021572 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4078062 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4112794 15114472 ~ 15116856 (+) False smdt1b

Expression Profile