RNA id: TU442861


Basic Information

Item Value
RNA id TU442861
length 4060
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id LOC113537644
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10929744 ~ 10933803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGtcagctcattcacacacatgaatcaaacagaaaagaagaaacacTTCTCTTTCTACCTTTAATTCTCTCCTCTAGCTGAAGGCAAAGAAATCCATCACAAAAGCAACAATAGGAGGTCTCAccacagacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtatacaAGAGGTTTAGGGCTTGAGCAAGCTGACTGAGTGACTGCATAGTGAATATTTGGTTTACTTACAGATGGGGGGGGGATATCAATAAAACTCCCATCATACAGCGCTGGAGGAgtacacaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaatgctaTCGAAGCAGCGGCACCGGTGTGATCTCTGCTTCTCGTTCCACTGAGGCTGAGGTCATGTACTGCTCATCggaaatgaaaaatgtgcacacacatgctcacagcactgacactaaagaaaaaaaaaatgaacaatcaaaaataaaataacaatcatGACATTACACGAATAAAAGTGTCAGCAAAAAGAAGAGAGGTACAGTCGGAAAATCGGAACATTAACACTCAGAACTCGAGCTTTCCTTGGATATGTGTGTACTAACGGTACAGGGTAAGAGAGAGCATGATACagctttttattaataaacgtTTGGTTGCAAAGAAGTTTATATAGGTGTTTAATGACAGCTGATCTGTTTGAATGCGTTTACATGCACAAAATAATCCAGTGTTTCCCAGTAATTAccttaattacattaattagtcCCGCCGGTTTCATAATGAACcgaaaatatttttacacatctCATAATAATGTAAAAGATCTCTATTTTGCACCATTGCTTCAGCAAAGCATCTCTTTCTCCAAGTCACTCAGACCACTCCCCCCTGGGTCAGTCAGACCACTCCCCCTGGGTCAGTCAGACCACTCCCCTCCCTCGTGCTGTACTTGAGCATGCTCACACACGCACTGGAAGCACCTGGGTGCATCCGAGACACCAAGGCATTTTGAGAACACAACATCGTTTGAGGTAAGTAACGTTAACCTCTCAACTGCTGttgattgttgttgtttacagtCACTGCACACTATTATCATGAcaatcttatttaatattaacttaTTAGAAGGATTTAGGACTCAATACTTGACTACTTTTTATGATACAAACGGTTACAGTGACAgtaatttcttaatttctgaCAGGAGTACACATCAAACATGCAAAATCAAACCGGTAGTTATTGATCTTTCGAATGGCATAACGCGACACGTACATATTCAATTGTGCCTGTTTTCGTTTCTTTGTGATCACAGAGCTTCGCTAAACAACAACTAAATAATGACCCTGCTAGCCAGTGAGTGTGATGAATGGGGACAGATCAACCCATTACGCAGCCGTTTGGCAGCAACTGCACTTGTCATTCTGGTGTCAAGCGTCAACTGTGAGAGAGACTTCTCCACACTGAACAGGGGCAGGACAGAGGGCATGGCAGCATGACCGAGTTGCCGAGATGTGCACCAAACATTTAACCCCACTGCACTTACATGATAAACTGCATATTCTTCTTAACTAAAAGAAGAAGTACAAACAGTGCACTCCAAATacttcttttcattcattcatttggctaATTGTAGTTACCTTCATTTTCAGGTTGAATCAGAGCTTTGCAACAGGCTGTGAGGAGAGCAACTGGCTGAAGGTCTCCATCAGCGGGCCGAGCCCAGAGGAATTCAACTACACAAGGGCATTAAAACTGGTTTTCTCAAAGCCCAGCAACATTAAATGTCCAAATTCAGGGTGTAAAGTTTGCCAATAGGGATGTAGGGAGATCAATACCATGTCATCTTCAtccagtatttatttatttatttattttttgttttctaaaaaacAAACCAGTTCACCACAGGTAACCACTTTTGCTTCATTTCTTTGATGGCTCAAATGTATTCTCAAGTCGATTTTGTGTTCTGCCCGTTTGTGAACCACGTTCACCATACTTTGTgggtgtgactttttttttgccgtGTCATCACCATTCATTATCTATACAACCagtgtgtttatgattaaattacTACTAGAGCACAAAATTGTTTACAAGAGCACATAGTTCTTCAGAGGTCTAGATTCTTAATTTTGCTCTCAAAGTGCATCAGATTGATGCATTTAACATCAAAATGTACAGAATCTTCTTACGGGGGTAGCATGCCCCCGGACAAAATCCTGTGGAGAAACACTGGAATCTGATAATGTTTCAAGGTTTACAGTTTGATAATCAGAACCTTCCTTCTACACAAGTCAGTCAGTAGGTAGATTTCTTTTAGTAATGCtgctataaatatttttcaatagCAAAGTGTCTGTATCGGGGCCCAAGATCGGTTATCAGCCGACTCACAGCTCTGATATTGATATCGCCTCAAAAGGAGAAATCAGGACCTCACTACTTTACACATTAGGCaacttgtaaatatttaaactatTTTCATGACCAAACAGCTGATtagcatttataaatgttacacaaGTTCTTTTTCATAAGgtatacaatattaaaaatatatcagctttgttatgtttttttatcgAGTCAAGTTAGTGCTAAATTTGTATTTGGGAGTTTTTAATGTCTGATCCACACTACAGTATTTATACAATGTTAACAGAGGTAGAACATTCGAGACCCCAGACATAATGACAGACACCAAACACTATATTACCGATTAAGCTTACAACCCACGCTTAGCCTAACTGACCAATGATCGTGAGCTTCGAAACCTGGGATTTTGCAGAATttcttgtggaaaaaaaatctgacttcAGATCAGAACAAACACTAGGGACAACAGTTCAGCTTACTGGTTATCAGTCTGTCATGCAAGACGTCAAGATTCCAGTAAATCCGAGGGgttaaaaatatacacacctcacaccaCAGTATAATCGGAGAAGATAATCGGACAAACTGGCGCTCATCTGAAGCTTCTGATTCGGGCAAAATTATCCTCTAGTGTGGCTCAGACATAAGGTTATCAAACTGactctactaaaaaaaaattacccttCTATATCAGtcagaaaaatttaaaaatgaaagatatcACATTAACACTATACATTTGCTAAATAATCTGATTATTCGGATGAAATCTAGGTGGCAACTTTCttgaaatgtatataatgaGATTTAAAAGGTAGTATGCTATTTACACAATCACGTGAATGccgtaaatatgtgaatttacaCGGccacttttaataataatgatgcagtGAATGCCGAGATCGGGTAATAATCGGATTATTAGTATGCATGTAAACGCATTCAGGGAACATACTCGTAACGTAACTGGTTGTGCTAGTTAAATGTGTGGAAATGTAAACGTGGTTTAGGCTGTTCCACAGATCTCTCTTATCTGCATGTGAAATTTAGCAAGCACAGTGGCTGCACAAGCCATACAGAAGTGTCAGTATCACCGTGCTGACTCAGCATTAATATGCTTTCGGTTGTAGTTTAATCTTTTACAAATGGATGACACCTTTAGCTGGGTGACATTTCACAAGATCTACACTCAGAAAGAGCAAGTGACTGACTGACAAACTGACAGAAAGTGATCATGTGGGGCAAGCCGGCAGGTTTGGAGATTTTTATACTGTACACAATATCATATTTTATAGTGCATTTAATGCAGATATGCTGATAAAGATGGCAGACTGGGGGAAAAAGGTGAAGCCCATCTCATAGGTATTGTAATATCaatttttaaacttataaagCTTCCTTTCTGTTGAAGCCCATCTACCCAGACTGCTATTCAACAGAAAAAACAATGAGGAGAAATTTCAAAACGCTACATCCACCACAGGACGGAACAGACTAAAGCTAACACAAATCACACCTACCTACATGATTACAGCTAACTGCTGAAATAGAGCTCTTATATAAATATGACCACTCGCATCTTTAATACTTGTTCTACCAATAATTAGTTAGCTATGAAATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442796 lncRNA upstream 118727 10809826 ~ 10811017 (+) True G373871
TU442795 lncRNA upstream 122300 10806240 ~ 10807444 (+) True G373870
TU442398 lncRNA upstream 266232 10645863 ~ 10663512 (+) True G373522
TU442414 lncRNA upstream 355249 10511081 ~ 10574495 (+) True G373538
TU442416 lncRNA upstream 399078 10528816 ~ 10530666 (+) True G373540
TU442877 lncRNA downstream 15128 10948931 ~ 10951480 (+) True G373934
TU442882 lncRNA downstream 27936 10961739 ~ 10965155 (+) True G373939
TU442930 lncRNA downstream 128213 11062016 ~ 11064035 (+) False LOC113537724
TU442932 lncRNA downstream 136319 11070122 ~ 11091105 (+) True G373975
TU442943 lncRNA downstream 201750 11135553 ~ 11135936 (+) True G373982
XM_034299947.1 mRNA upstream 1893 10894036 ~ 10927851 (+) True pnpla6
XM_034299946.1 mRNA upstream 1893 10894036 ~ 10927851 (+) False pnpla6
XM_034299948.1 mRNA upstream 1893 10894036 ~ 10927851 (+) False pnpla6
XM_034299949.1 mRNA upstream 1893 10900656 ~ 10927851 (+) False pnpla6
XM_034300281.1 mRNA upstream 42945 10883180 ~ 10886799 (+) True LOC117596166
XM_034300389.1 mRNA downstream 62935 10996738 ~ 11001678 (+) False c26h19orf67
XM_034300388.1 mRNA downstream 63119 10996922 ~ 11001678 (+) False c26h19orf67
XM_034300387.1 mRNA downstream 63122 10996925 ~ 11001678 (+) False c26h19orf67
XM_026931665.2 mRNA downstream 63128 10996931 ~ 11001570 (+) True c26h19orf67
XM_026931666.2 mRNA downstream 63128 10996931 ~ 11001570 (+) False c26h19orf67
TU442162 other upstream 1053191 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2775889 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4210918 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5722013 5207595 ~ 5207731 (+) True LOC113537771
XR_003403603.2 other upstream 6015897 4664294 ~ 4913847 (+) False dmd
TU442901 other downstream 72205 11006008 ~ 11009620 (+) True G373955
XR_004577362.1 other downstream 3082720 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 3089447 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4145937 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4180669 15114472 ~ 15116856 (+) False smdt1b

Expression Profile